PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G207600.1.p

Common Name

Sb10g025450, SORBIDRAFT_10g025450

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

bZIP

Protein Properties

Length: 295aa MW: 30318.1 Da PI: 9.6348

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G207600.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	27.7	6e-09	199	241	21	63
HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 21 RqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 R+RKk+++ e ++ v +L+ eN+aL+ke++ l+ +a+l +e+ Sobic.010G207600.1.p 199 RARKKMRLPEIQQMVRSLSVENDALRKEMKALQRACAALSQEN 241 9**************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.20.5.170	3.5E-6	199	239	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 295 aa Download sequence Send to blast
MTAAVDGEAC AVVAAAADII CSLRGADLAG WTPPWRKHEP AACDGGQEKS GCGGGGGDDV 60 DERDLAWPAV ARGKRSRSSR RESPSASASA ASADAKKEEK KKKKARRGAR GSPASPMDYS 120 GGSGSGSGAS TSGGEDGAFC SQPEPPPAFP PAATAAVAAV CQQLAAPAAP APPPPSKVGG 180 VAGRRTILPV PPPRPAGQRA RKKMRLPEIQ QMVRSLSVEN DALRKEMKAL QRACAALSQE 240 NGKLETRLDQ STSRNKVISV ENKGKKPQAE HQHTAEQEAP NGFVLPDLNL PADV*

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	198	204	RARKKMR

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G207600.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_002438747.1	0.0	formin-like protein 4
TrEMBL	C5Z6R7	0.0	C5Z6R7_SORBI; Uncharacterized protein
STRING	Sb10g025450.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3790	29	51
Representative plant	OGRP17379	2	3

Link Out ? help Back to Top
Phytozome	Sobic.010G207600.1.p
Entrez Gene	8058413