PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G193800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 308aa    MW: 31709 Da    PI: 10.0293
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G193800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-073660226
                          -S---SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHg 26
                          k ++C  f+ t  C++G++C+F H 
  Sobic.010G193800.1.p 36 KSKPCTKFFSTAGCPFGASCHFLHN 60
                          7789********************7 PP
2zf-CCCH201.2e-06102127227
                           -S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                           kt+ C+ +     Ck G++C+FaHg+
  Sobic.010G193800.1.p 102 KTRMCNKYNTAEGCKWGSKCHFAHGE 127
                           89**********************96 PP
3zf-CCCH36.58e-12273298127
                           --S---SGGGGTS--TTTTT-SS-SSS CS
               zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHgp 27 
                           +kt+lC +f + G C +GdrC+FaHg+
  Sobic.010G193800.1.p 273 FKTKLCENFNK-GSCTFGDRCHFAHGE 298
                           69*********.*************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010312.9153462IPR000571Zinc finger, CCCH-type
SMARTSM003560.33461IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-63562IPR000571Zinc finger, CCCH-type
PfamPF006423.6E-53660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.1E-83660IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.6E-1496132IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.06E-8100131IPR000571Zinc finger, CCCH-type
SMARTSM003561.4100127IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010312.558100128IPR000571Zinc finger, CCCH-type
SuperFamilySSF547911.4E-14171242IPR004088K Homology domain, type 1
SMARTSM003227.8E-11172242IPR004087K Homology domain
PROSITE profilePS5008415.2173237IPR004088K Homology domain, type 1
Gene3DG3DSA:3.30.1370.109.2E-16173241IPR004088K Homology domain, type 1
CDDcd001052.95E-14175237No hitNo description
PfamPF000131.7E-11175238IPR004088K Homology domain, type 1
Gene3DG3DSA:4.10.1000.103.8E-17270304IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-7272298IPR000571Zinc finger, CCCH-type
SuperFamilySSF902296.02E-9272303IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010317.131272299IPR000571Zinc finger, CCCH-type
PfamPF006421.9E-9273298IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MDAGRKRTAP EAGANGAGGP KRARESETTQ MGVGSKSKPC TKFFSTAGCP FGASCHFLHN  60
FPGGYQAVSK MTNLGGPPVP APPGRMPMGP GGPDGPPSPA VKTRMCNKYN TAEGCKWGSK  120
CHFAHGEREL GKPLQMDNSM GAPPPMGPGP NGHFMPPPMP HLDMVPPSTF GASATAKISV  180
DASLAGAIIG KGGANTKHIS RVTGAKLAIR DNEADPNHKN IELEGTFDQI KHASAMVTEL  240
IVRISGKAPG PQAKNNPGGR GPGSHAGGPG SNFKTKLCEN FNKGSCTFGD RCHFAHGESE  300
LRKPAAA*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.14460.0callus| leaf| pollen| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G193800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0878740.0BT087874.1 Zea mays full-length cDNA clone ZM_BFb0279J08 mRNA, complete cds.
GenBankEU9680080.0EU968008.1 Zea mays clone 312808 zinc finger C-x8-C-x5-C-x3-H type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305248.10.0zinc finger CCCH domain-containing protein 44-like isoform X1
SwissprotQ69XQ31e-164C3H44_ORYSJ; Zinc finger CCCH domain-containing protein 44
TrEMBLA0A194YL980.0A0A194YL98_SORBI; Uncharacterized protein
STRINGSb10g024330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125438127
Representative plantOGRP10261756
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12130.13e-51C3H family protein