PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G189500.3.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 469aa MW: 49662.4 Da PI: 7.5232 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 307.7 | 2.8e-94 | 84 | 468 | 2 | 374 |
GRAS 2 velLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPi 90 ++l+l+cA+ ++ gdl++a+++ l asp++d+ Rla +f++ALa r ++ a ++ + s+ + +a+ +f+++ P+ Sobic.010G189500.3.p 84 RDLVLACADLLQRGDLQAARRAAGVLLSAASPRADAADRLAYHFARALALRADVRAAAVA-AGRVVAPGLVASAATSSAYLAFNQIAPF 171 6899***********************************************987444444.455555555679999999999******* PP GRAS 91 lkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRp...egppslRiTgvgspesgskeeleetgerLakfAeelgvpf 176 l+f+hltaNqaIl+aveg++r+Hi+D+d+ +G+QWp+Llqa+a+R+ +gpp++RiTg g+ ++++l +tg+rL+ fA+++++pf Sobic.010G189500.3.p 172 LRFAHLTANQAILDAVEGARRIHILDLDAAHGVQWPPLLQAIAERAdpaAGPPEVRITGAGA----DRDTLLRTGSRLRAFARSIQLPF 256 *********************************************988888***********....9********************** PP GRAS 177 efnvl.................vakrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadh 248 +f++l +++++++ ++L+++p+E+laVn+v+ lh+l ++e ++Lk vk + P vv+v+e+e+ Sobic.010G189500.3.p 257 HFTPLllscaathhhqhvasgsTTTTTNSSAASSLELHPDETLAVNCVMFLHKLG-----GQDELAAFLKWVKAMAPAVVTVAERETIG 340 *****99999999988876665555666668999********************8.....2233577*******************655 PP GRAS 249 nse....sFlerflealeyysalfdsleaklpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplseka 333 ++ ++ +r + a+++ysa+f++lea++p+ s+er vE+e+lgrei ++ ++g + + le+W ++ ++aGF + pls +a Sobic.010G189500.3.p 341 GGFdridDLPQRAAVAMDHYSAVFEALEATVPPGSRERLAVEQEVLGREIDAALDASGGR---WWRGLERWGAAARAAGFAARPLSAFA 426 44334449**********************************************999987...7899********************** PP GRAS 334 akqaklllrkvk.sdgyrveeesgslvlgWkdrpLvsvSaWr 374 ++qa+lllr ++ s+gy v+e +g+ +lgW++rpL+svS+W+ Sobic.010G189500.3.p 427 VSQARLLLRLHYpSEGYLVQEARGACFLGWQTRPLLSVSSWQ 468 *****************************************6 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 50.898 | 57 | 447 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 9.6E-92 | 84 | 468 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010014 | Biological Process | meristem initiation | ||||
GO:0010223 | Biological Process | secondary shoot formation | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 469 aa Download sequence Send to blast |
MSLLVGNDGV QVEVMIVCLI WGLRHSIQED FKKLGLGGTT TVVQAMLSSL HHHHSSSSSD 60 TDTNNGNNKN GSSGVLAAAV PSARDLVLAC ADLLQRGDLQ AARRAAGVLL SAASPRADAA 120 DRLAYHFARA LALRADVRAA AVAAGRVVAP GLVASAATSS AYLAFNQIAP FLRFAHLTAN 180 QAILDAVEGA RRIHILDLDA AHGVQWPPLL QAIAERADPA AGPPEVRITG AGADRDTLLR 240 TGSRLRAFAR SIQLPFHFTP LLLSCAATHH HQHVASGSTT TTTNSSAASS LELHPDETLA 300 VNCVMFLHKL GGQDELAAFL KWVKAMAPAV VTVAERETIG GGFDRIDDLP QRAAVAMDHY 360 SAVFEALEAT VPPGSRERLA VEQEVLGREI DAALDASGGR WWRGLERWGA AARAAGFAAR 420 PLSAFAVSQA RLLLRLHYPS EGYLVQEARG ACFLGWQTRP LLSVSSWQ* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_A | 2e-46 | 90 | 467 | 25 | 377 | Protein SCARECROW |
5b3h_D | 2e-46 | 90 | 467 | 25 | 377 | Protein SCARECROW |
Search in ModeBase |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in a small number of epidermal or subepidermal cells at the leaf axils, in axillary meristems and the entire tiller buds. Undetected in the shoot apical meristem. {ECO:0000269|PubMed:12687001}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Putative transcription regulator that controls rice tillering by initiating axillary buds and promoting their outgrowth. Rice tiller is a specialized grain-bearing branch that is formed on the unelongated basal internode and grows independently of the mother stem (culm) by means of its own adventitious roots. {ECO:0000269|PubMed:12687001}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G189500.3.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | JQ951675 | 0.0 | JQ951675.1 Sorghum bicolor Monoculm1A (moc1A) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002437271.2 | 0.0 | LOW QUALITY PROTEIN: protein MONOCULM 1 | ||||
Swissprot | Q84MM9 | 0.0 | MOC_ORYSJ; Protein MONOCULM 1 | ||||
TrEMBL | A0A1W0VTV7 | 0.0 | A0A1W0VTV7_SORBI; Uncharacterized protein | ||||
STRING | Sb10g023950.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3653 | 34 | 79 | Representative plant | OGRP5491 | 14 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G55580.1 | 4e-71 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G189500.3.p |