PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G173400.1.p
Common NameSb10g022580, SORBIDRAFT_10g022580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 387aa    MW: 40717 Da    PI: 8.2923
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G173400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA54.51.5e-17190223134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           Cs C+ttkTplWR+gp g+k+LCnaCG+++rk +
  Sobic.010G173400.1.p 190 CSDCNTTKTPLWRSGPCGPKSLCNACGIRQRKAR 223
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577163.94E-13181226No hitNo description
SMARTSM004011.2E-17184235IPR000679Zinc finger, GATA-type
Gene3DG3DSA:3.30.50.101.9E-14188223IPR013088Zinc finger, NHR/GATA-type
PROSITE profilePS5011412.268188220IPR000679Zinc finger, GATA-type
CDDcd002022.91E-14189221No hitNo description
PfamPF003202.9E-15190223IPR000679Zinc finger, GATA-type
PROSITE patternPS003440190215IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0007623Biological Processcircadian rhythm
GO:0009416Biological Processresponse to light stimulus
GO:0009740Biological Processgibberellic acid mediated signaling pathway
GO:0009910Biological Processnegative regulation of flower development
GO:0010187Biological Processnegative regulation of seed germination
GO:0010255Biological Processglucose mediated signaling pathway
GO:0010380Biological Processregulation of chlorophyll biosynthetic process
GO:0030154Biological Processcell differentiation
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0005667Cellular Componenttranscription factor complex
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001085Molecular FunctionRNA polymerase II transcription factor binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0003682Molecular Functionchromatin binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 387 aa     Download sequence    Send to blast
MSAIYMSQLS TALPLMEGDH HHHHHHHHQG HFQAFTLPKD PPILFPFVIS NSSASESSLS  60
YGSADHHLLR QHRQTMLEPQ HMIGGSSSAA SSVFATPFPT VESIRDDMIE PASYDPYDMG  120
KLHQVVGGGS SMDACSWTPP AAKMRITRKA TAADPSGAGK KPRRRAHQAA GYDADINMSG  180
QPNLGVIRVC SDCNTTKTPL WRSGPCGPKS LCNACGIRQR KARRAMMAAA STSGPAAVPA  240
TDSDKASPSN AAGAAAAHPK VKKEKRSVDV DRSLPFKKRC KVVQVQQDHA AAVAAPAAAT  300
DRPAVVVQQA ATAAEVGDDD ACPSRDLLVD DIGGLISWSR SPPAAPASAD AASCSFRASP  360
ALPVQQDEIT DAAMLLMTLS CGLVRS*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.24670.0leaf| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G173400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437185.10.0putative GATA transcription factor 22
TrEMBLC5Z5300.0C5Z530_SORBI; Uncharacterized protein
STRINGSb10g022580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP18933899
Representative plantOGRP6817287
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56860.13e-20GATA family protein