PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G164800.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 284aa    MW: 29469 Da    PI: 4.3835
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G164800.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP255.51.5e-173580352
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkk 52
                          y+GVr +  +g+Wv+eIr+p++   + r++lg+f tae+Aa+a++aa++ 
  Sobic.010G164800.1.p 35 YRGVRMRA-WGKWVSEIREPRK---KSRIWLGTFPTAEMAARAHDAAALV 80
                          9****998.**********843...6*********************975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.7E-123379IPR001471AP2/ERF domain
SMARTSM003801.5E-333497IPR001471AP2/ERF domain
SuperFamilySSF541713.4E-213492IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.6E-313493IPR001471AP2/ERF domain
PROSITE profilePS5103223.3273491IPR001471AP2/ERF domain
PRINTSPR003671.5E-103546IPR001471AP2/ERF domain
CDDcd000181.28E-183892No hitNo description
PRINTSPR003671.5E-105773IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 284 aa     Download sequence    Send to blast
MPDSDVVPSP PPLGSSVQKI RGSGGGRGGG RRPAYRGVRM RAWGKWVSEI REPRKKSRIW  60
LGTFPTAEMA ARAHDAAALV VKGRGAVLNF PDMAASLPRP ASAAPRDVQA AAARAAAMDV  120
NVAVPAVGAT AAAAAAAMVP PSPTPEPEPL SSSSTSSSPR QVPGGQALVV VGDPDEDELL  180
EEIVELPPID DDEDVVLTSS DDVFCWTTAA SFHDDCAAPD DPWSSYEPSA WMMQAGGGIA  240
AAHHVDEMVV PGTGFATDQQ QLWTTTQPDG IMPSGLGAFL WNL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-182591472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G164800.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9745751e-127EU974575.1 Zea mays clone 453357 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437140.20.0ethylene-responsive transcription factor ERF043
TrEMBLA0A194YJK30.0A0A194YJK3_SORBI; Uncharacterized protein
STRINGSb10g021870.11e-130(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15935354
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G32800.13e-18ERF family protein