PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G155100.1.p
Common NameSb10g020860, SORBIDRAFT_10g020860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 356aa    MW: 39665.1 Da    PI: 7.0452
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G155100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM168.81.8e-52101391128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                           +ppGfrFhPtdeel+ +yL+kkv+ ++++l +vi+e+d++k+ePwdL++  ++ +  ++ewyfFs++dkky+tg+r+nrat++g+Wkat
  Sobic.010G155100.1.p  10 VPPGFRFHPTDEELLYYYLRKKVAYEPIDL-DVIREIDLNKLEPWDLKErcRIGTgPQNEWYFFSHKDKKYPTGTRTNRATTAGFWKAT 97 
                           69****************************.9***************953444443456****************************** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
                           g+dk+++  + + +gl+ktLvfy grap+g+ktdW+mheyrl
  Sobic.010G155100.1.p  98 GRDKAIFLGNARRIGLRKTLVFYIGRAPHGKKTDWIMHEYRL 139
                           ********999*****************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.83E-587159IPR003441NAC domain
PROSITE profilePS5100557.96410159IPR003441NAC domain
PfamPF023651.6E-2711139IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003002Biological Processregionalization
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009834Biological Processplant-type secondary cell wall biogenesis
GO:0010455Biological Processpositive regulation of cell fate commitment
GO:0048829Biological Processroot cap development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 356 aa     Download sequence    Send to blast
MHPGGGPLSV PPGFRFHPTD EELLYYYLRK KVAYEPIDLD VIREIDLNKL EPWDLKERCR  60
IGTGPQNEWY FFSHKDKKYP TGTRTNRATT AGFWKATGRD KAIFLGNARR IGLRKTLVFY  120
IGRAPHGKKT DWIMHEYRLD EENVEIQEEG WVVCRVFKKK SYHQRGLNPA EMALLEDDEL  180
QPFPVPIPGS SLPTEHKNNP HLMQYDFPSF DPSMQLPQLM SADQPVPTLL PSHPGPGVAM  240
AMSSLDVECS QNNLTKLTAN GSDGMLHVHG GGAGGGVDRF AGTTDWSILD KLLASHQNLD  300
QLFHGKVTAA SASPPMAAYH QQLMELGGSS SSSSLQRLPL QYLGGETADL LRFPK*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A3e-51816515171NO APICAL MERISTEM PROTEIN
1ut4_B3e-51816515171NO APICAL MERISTEM PROTEIN
1ut7_A3e-51816515171NO APICAL MERISTEM PROTEIN
1ut7_B3e-51816515171NO APICAL MERISTEM PROTEIN
4dul_A3e-51816515171NAC domain-containing protein 19
4dul_B3e-51816515171NAC domain-containing protein 19
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269|PubMed:10660065}.
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in stress response. {ECO:0000250|UniProtKB:Q7F2L3}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00250DAPTransfer from AT1G79580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G155100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAJ8339650.0AJ833965.1 Zea mays partial mRNA for hypothetical protein (nac6 gene).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306089.10.0NAC domain-containing protein 76
SwissprotQ5Z6B61e-121NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBLA0A194YJE90.0A0A194YJE9_SORBI; Uncharacterized protein
STRINGSb10g020860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP34613781
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G79580.34e-96NAC family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]