PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G155000.2.p

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

NAC

Protein Properties

Length: 287aa MW: 32098.2 Da PI: 6.7406

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G155000.2.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	90.7	2.5e-28	12	85	55	128
NAM 55 ekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128 ++ewyfFs++d ky+tg+r+nrat+ g+Wkatg+dk ++ +++ + l+ktLv y grap+g+ktdW+mheyrl Sobic.010G155000.2.p 12 QNEWYFFSHKDMKYPTGTRTNRATTVGFWKATGRDKGIFLGNSRRISLRKTLVSYIGRAPHGKKTDWIMHEYRL 85 57**********************************************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51005	36.143	1	105	IPR003441	NAC domain
SuperFamily	SSF101941	1.83E-31	11	105	IPR003441	NAC domain
Pfam	PF02365	4.3E-12	14	85	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 287 aa Download sequence Send to blast
MAERCRIGTG PQNEWYFFSH KDMKYPTGTR TNRATTVGFW KATGRDKGIF LGNSRRISLR 60 KTLVSYIGRA PHGKKTDWIM HEYRLDEENI EIHEDGWVVC RVFKKNYRQG GPNPAEALPE 120 IVVAADDDEI QHFPVPIPGS LPTEHRNNPH LMQYNFPSFD PSLQLPQLMS ADQHVPTLLR 180 SQPGVAMPMS SLDVECSQNL TKLTSNSSDG MLNGGDWLIL DMLLILHQNL DQLFHNKVTA 240 ASSSPMTAYY QQFMELGSSS SLHRLPVQYT GSEAADFSGS QVVGST*

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	7e-29	12	106	70	166	NO APICAL MERISTEM PROTEIN
1ut4_B	7e-29	12	106	70	166	NO APICAL MERISTEM PROTEIN
1ut7_A	7e-29	12	106	70	166	NO APICAL MERISTEM PROTEIN
1ut7_B	7e-29	12	106	70	166	NO APICAL MERISTEM PROTEIN
3swm_A	7e-29	12	106	73	169	NAC domain-containing protein 19
3swm_B	7e-29	12	106	73	169	NAC domain-containing protein 19
3swm_C	7e-29	12	106	73	169	NAC domain-containing protein 19
3swm_D	7e-29	12	106	73	169	NAC domain-containing protein 19
3swp_A	7e-29	12	106	73	169	NAC domain-containing protein 19
3swp_B	7e-29	12	106	73	169	NAC domain-containing protein 19
3swp_C	7e-29	12	106	73	169	NAC domain-containing protein 19
3swp_D	7e-29	12	106	73	169	NAC domain-containing protein 19
4dul_A	7e-29	12	106	70	166	NAC domain-containing protein 19
4dul_B	7e-29	12	106	70	166	NAC domain-containing protein 19
Search in ModeBase

Expression -- Description ? help Back to Top
Source	Description
Uniprot	TISSUE SPECIFICITY: Expressed in leaf blades, developing flowers, embryo and callus. Weakly expressed in roots. {ECO:0000269\|PubMed:10660065}.

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor involved in stress response. {ECO:0000250\|UniProtKB:Q7F2L3}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G155000.2.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	BT038816	1e-103	BT038816.1 Zea mays full-length cDNA clone ZM_BFb0329L19 mRNA, complete cds.
GenBank	EU977078	1e-103	EU977078.1 Zea mays clone 998381 NAC domain-containing protein 76 mRNA, complete cds.
GenBank	JX428482	1e-103	JX428482.1 Zea mays subsp. mays clone pUT3079 NAC116 NAC type transcription factor mRNA, partial cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_004965525.1	1e-150	NAC domain-containing protein 76
Swissprot	Q5Z6B6	3e-70	NAC76_ORYSJ; NAC domain-containing protein 76
TrEMBL	A0A1W0VT87	0.0	A0A1W0VT87_SORBI; Uncharacterized protein
STRING	Si007822m	1e-150	(Setaria italica)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP3461	37	81
Representative plant	OGRP17	15	800

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G79580.3	5e-66	NAC family protein

Link Out ? help Back to Top
Phytozome	Sobic.010G155000.2.p

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]