PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.010G148600.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | WRKY | ||||||||
Protein Properties | Length: 386aa MW: 41695.7 Da PI: 6.4381 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 74.3 | 1.5e-23 | 174 | 230 | 3 | 59 |
-SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 D ++WrKYGqK++k++++ rsYYrC++ +C+++k+v+r+ ++++ + Y geH h+ Sobic.010G148600.2.p 174 DSWAWRKYGQKSIKDTPYHRSYYRCSTDkKCKARKHVQRCL-TQSFLAVSYIGEHSHP 230 99***********************9998************.899************8 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 3.0E-25 | 159 | 232 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 9.81E-22 | 166 | 232 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 22.951 | 167 | 232 | IPR003657 | WRKY domain |
SMART | SM00774 | 1.9E-27 | 172 | 231 | IPR003657 | WRKY domain |
Pfam | PF03106 | 8.1E-21 | 174 | 230 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 386 aa Download sequence Send to blast |
MDDGRDGNNW DLNAVLRSGC HGPMPPPPPP PTRTANNPVA RYAPPPPAQP SYAFTVLAGG 60 LGHQAISVLP QPQALDQDPP HAAGRGPSLD LPLLPEPDYT AAVGNTPAPL NPPWPRNEIP 120 VPSVQQRPAD KHKTPPSSGC DAAEGSSRSK KRDNRTTKES KVVLVLAEDP TPPDSWAWRK 180 YGQKSIKDTP YHRSYYRCST DKKCKARKHV QRCLTQSFLA VSYIGEHSHP MPLARNGQAG 240 TTHQKPPPRQ PTSPFIRTPA KEDQPHHQAP APPPATSSSP FAMISAAKQT PAPPAALLPP 300 PSVEFDNEKD DDAVAVRMLL NDMDMTPEDA LKFVNPEEEP LDGVGDDLLI PTPEELAPFY 360 YGDEENMLYP MASEPASGGS RNTKA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5w3x_B | 2e-12 | 157 | 232 | 3 | 79 | Disease resistance protein RRS1 |
5w3x_D | 2e-12 | 157 | 232 | 3 | 79 | Disease resistance protein RRS1 |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.010G148600.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021305538.1 | 0.0 | extensin-like | ||||
TrEMBL | A0A1W0VT45 | 0.0 | A0A1W0VT45_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP27734 | 4 | 5 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT4G01250.1 | 4e-25 | WRKY family protein |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.010G148600.2.p |