PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G148400.1.p | ||||||||
Common Name | Sb10g019790, SORBIDRAFT_10g019790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 185aa MW: 20360.1 Da PI: 8.7799 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 25.7 | 1.5e-08 | 7 | 54 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 ri+n+ +r f kRr +++ A +S +a vav+ fs+tg+ + + Sobic.010G148400.1.p 7 RIDNEEQRRSCFRKRRPTLFTMARDISEEFGAHVAVVAFSPTGEAHAF 54 8******************************************98877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.1E-4 | 1 | 57 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 13.638 | 4 | 58 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.49E-13 | 4 | 69 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.8E-14 | 7 | 54 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 185 aa Download sequence Send to blast |
MVRELRRIDN EEQRRSCFRK RRPTLFTMAR DISEEFGAHV AVVAFSPTGE AHAFGGPTVD 60 SVLRTHLPAD GASSHPPFPS LDAAAETAGE ATARVAGLRR DGEETKALVA KEWARVAATR 120 EKVKTAQATA QKKNWWEVDA EALGEEELPV FIRALELLKS DVKGRVDVVT SSRLNLPCRE 180 KKQQ* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G148400.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002438447.1 | 1e-131 | agamous-like MADS-box protein AGL61 | ||||
TrEMBL | C5Z3H0 | 1e-130 | C5Z3H0_SORBI; Uncharacterized protein | ||||
STRING | Sb10g019790.1 | 1e-131 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7989 | 5 | 12 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G60440.1 | 9e-11 | AGAMOUS-like 62 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G148400.1.p |
Entrez Gene | 8085379 |