PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sobic.010G141700.1.p

Common Name

Sb10g016950, SORBIDRAFT_10g016950

Organism

Sorghum bicolor

Taxonomic ID

4558

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum

Family

FAR1

Protein Properties

Length: 663aa MW: 76174.8 Da PI: 9.2884

Description

FAR1 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sobic.010G141700.1.p	genome	JGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	FAR1	26	3e-08	55	99	48	91
FAR1 48 tekerrtraetrtgCkaklkvkkek.dgkwevtkleleHnHelap 91 e++ +++++ r+gCka +kvk + +g w ++++leH+H+l p Sobic.010G141700.1.p 55 GEERVKEKMSMRCGCKAFVKVKWNIkKGYWFFERIRLEHSHPLHP 99 56788999************9988**************975 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03101	2.1E-5	56	99	IPR004330	FAR1 DNA binding domain
Pfam	PF10551	1.2E-16	192	250	IPR018289	MULE transposase domain

Sequence ? help Back to Top
Protein Sequence Length: 663 aa Download sequence Send to blast
MATPMPNGTA TSNSSPSPCL PPARLVTVTP LQSVSPATMV TPDKDKTALG FYKPGEERVK 60 EKMSMRCGCK AFVKVKWNIK KGYWFFERIR LEHSHPLHPS PSLTQYMKAH KDKEPTIMGI 120 VDQMQRCDVP LNATVNVLSD IYGGRQNFTF TEMDLKNRKA AAAKAEREND IPKLLEFFSE 180 MKAQNEYFYY EVQDEQADTF EWLFKSFQKC MSGSRDPRCI LTDQDPAMAL AISRVFKKTQ 240 HRLCRWHMLN KYRNELKKLY KLHEGLKIKL LTVINHPLTP VEFEAAWNAL VDEYGIREDE 300 AIQGLWQNRH LWVAAYLKPL YCGRMTSTQR SESVNKMLKS RHFTGHMTCI SKFARKMLEF 360 IQHTNHTAAG ETHWSQAYNF RVTLQRFDGH LSRVYTRAVF KKYRDTYVYS TAFRIDPDAD 420 NIDSFLVTHT NQSWQYAWFQ HSFKVQANVR EEYIKKRYTR DPRMMVTWDR NDIMNLGEDC 480 EDERYNTKKL VEVAMMAVRA LRKTKTGVKR GCDDFLALAE WGESIARDTG ATLNGDTGND 540 GVAANIEREE RQVPTFGEGE ETETGLDHEL ISECAPREAL TKGRKHGGKR LERDETCIKK 600 SGGTRNCSHC GLKGHYITGC PTNLDNASKK RGGTCSLRGK MGRKRGRPST KRQLDDEFDE 660 VA*

Sequence ? help Back to Top

Protein Sequence Length: 663 aa Download sequence Send to blast

MATPMPNGTA TSNSSPSPCL PPARLVTVTP LQSVSPATMV TPDKDKTALG FYKPGEERVK  60
EKMSMRCGCK AFVKVKWNIK KGYWFFERIR LEHSHPLHPS PSLTQYMKAH KDKEPTIMGI  120
VDQMQRCDVP LNATVNVLSD IYGGRQNFTF TEMDLKNRKA AAAKAEREND IPKLLEFFSE  180
MKAQNEYFYY EVQDEQADTF EWLFKSFQKC MSGSRDPRCI LTDQDPAMAL AISRVFKKTQ  240
HRLCRWHMLN KYRNELKKLY KLHEGLKIKL LTVINHPLTP VEFEAAWNAL VDEYGIREDE  300
AIQGLWQNRH LWVAAYLKPL YCGRMTSTQR SESVNKMLKS RHFTGHMTCI SKFARKMLEF  360
IQHTNHTAAG ETHWSQAYNF RVTLQRFDGH LSRVYTRAVF KKYRDTYVYS TAFRIDPDAD  420
NIDSFLVTHT NQSWQYAWFQ HSFKVQANVR EEYIKKRYTR DPRMMVTWDR NDIMNLGEDC  480
EDERYNTKKL VEVAMMAVRA LRKTKTGVKR GCDDFLALAE WGESIARDTG ATLNGDTGND  540
GVAANIEREE RQVPTFGEGE ETETGLDHEL ISECAPREAL TKGRKHGGKR LERDETCIKK  600
SGGTRNCSHC GLKGHYITGC PTNLDNASKK RGGTCSLRGK MGRKRGRPST KRQLDDEFDE  660
VA*

Cis-element ? help Back to Top
Source	Link
PlantRegMap	Sobic.010G141700.1.p

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_022681792.1	0.0	protein FAR1-RELATED SEQUENCE 5
TrEMBL	C5Z2Z9	0.0	C5Z2Z9_SORBI; Uncharacterized protein
STRING	Sb10g016950.1	0.0	(Sorghum bicolor)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Monocots	OGMP16437	3	6

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G15090.1	4e-24	FAR1 family protein

Link Out ? help Back to Top
Phytozome	Sobic.010G141700.1.p
Entrez Gene	8085343