PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G133566.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 297aa    MW: 32690.4 Da    PI: 10.6185
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G133566.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP252.41.3e-163886253
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkl 53
                          +y+GVr+++ +g+++AeIrdp+ +g   r++lg+++ + eA +a+++a+ ++
  Sobic.010G133566.1.p 38 KYRGVRQRP-WGKYAAEIRDPKRRG--SRVWLGTYDAPVEATRAYDRAAFRM 86
                          8********.**********96554..**********************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.102.6E-293797IPR001471AP2/ERF domain
PROSITE profilePS5103221.8523896IPR001471AP2/ERF domain
SuperFamilySSF541715.89E-203897IPR016177DNA-binding domain
CDDcd000182.92E-253897No hitNo description
PfamPF008471.7E-113888IPR001471AP2/ERF domain
SMARTSM003806.2E-3138102IPR001471AP2/ERF domain
PRINTSPR003671.2E-83950IPR001471AP2/ERF domain
PRINTSPR003671.2E-86278IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 297 aa     Download sequence    Send to blast
MEEGLGLPGR GGREPRRTSR PWRTKPPYRT KPPPRDRKYR GVRQRPWGKY AAEIRDPKRR  60
GSRVWLGTYD APVEATRAYD RAAFRMCAAK AILNFPNERR RTANKRKRQQ MEGGQDDPEV  120
EVVAVVNKVV KIEAPPPPST QVSSTSPSSV STPETTASSD APDSRRPSLS SGDVLVRQQK  180
QSRRRNSSQK QLFGEERNCE GVVPKSSASR TAHTTEVAVG QGHDGAPAAN SEAGTSCRAD  240
RTEDVVAGIS ETITSSSRCM FSQMAIVTAN EIATSDAEKK YTHESMSRRL NDSSFD*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-233596263ATERF1
3gcc_A2e-233596263ATERF1
5wx9_A3e-2338981474Ethylene-responsive transcription factor ERF096
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G133566.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7275257e-78KJ727525.1 Zea mays clone pUT5385 AP2-EREBP transcription factor (EREB61) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0VST20.0A0A1W0VST2_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP10337465
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G47230.12e-26ethylene responsive element binding factor 5