PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G123500.2.p
Common NameSb10g010860, SORBIDRAFT_10g010860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 407aa    MW: 43706.6 Da    PI: 5.0485
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G123500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box20.69e-07445540
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40
                           C+ ++e++   +C+++   lC +C  + H+       Ht++
  Sobic.010G123500.2.p  4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45
                          6*****************************657888889876 PP
2zf-B_box22.32.7e-074789541
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41
                           C+++ ++++   C   +  lC++C  ++H        H++++
  Sobic.010G123500.2.p 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgssaagHKRQT 89
                          7*****************************3256677788765 PP
3CCT64.14e-22349391143
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 
                           R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk 
  Sobic.010G123500.2.p 349 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKV 391
                           899**************************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501199.94147IPR000315B-box-type zinc finger
SMARTSM003361.0E-10147IPR000315B-box-type zinc finger
CDDcd000211.11E-7447No hitNo description
PROSITE profilePS501199.1154390IPR000315B-box-type zinc finger
CDDcd000211.59E-54790No hitNo description
SMARTSM003360.214890IPR000315B-box-type zinc finger
PROSITE profilePS5101715.338349391IPR010402CCT domain
PfamPF062036.5E-17349391IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 407 aa     Download sequence    Send to blast
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC  60
LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN  120
CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL  180
ATDQTAGSVD SPPDKVPYTP DKDMFSKDSI YEDFCVDDVD LAFENYEELF GTSHIQTEQL  240
FDDAGIDSYF EVKEAPAGNS TEQSKLKQPA NSNAVSADSG MSNPGVKGDS SVCIPLRQAR  300
SSLSLSFSGL TGESSAGDHQ DCVVSSLLLM GEPPWQPPGP EGSIAGGSRD SAITRYKEKK  360
KRRKFDKKIR YASRKARADV RKRVKGRFVK VGEAYDYDPL CQTRSY*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1358362KKKRR
2358363KKKRRK
3359363KKRRK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G123500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9627670.0EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438266.10.0zinc finger protein CONSTANS-LIKE 9 isoform X2
SwissprotQ9SSE51e-125COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9
TrEMBLC5Z9160.0C5Z916_SORBI; Uncharacterized protein
STRINGSb10g010860.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48250.15e-76B-box type zinc finger protein with CCT domain