PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G123500.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | CO-like | ||||||||
Protein Properties | Length: 412aa MW: 44239.2 Da PI: 4.9579 | ||||||||
Description | CO-like family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-B_box | 20.6 | 9.2e-07 | 4 | 45 | 5 | 40 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvv 40 C+ ++e++ +C+++ lC +C + H+ Ht++ Sobic.010G123500.1.p 4 LCDFCGEQRSMVYCRSDAASLCLSCDRNVHSAnalsrrHTRT 45 6*****************************657888889876 PP | |||||||
2 | zf-B_box | 22.3 | 2.7e-07 | 47 | 89 | 5 | 41 |
zf-B_box 5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvp 41 C+++ ++++ C + lC++C ++H H++++ Sobic.010G123500.1.p 47 LCDRCASQPAMVRCLAENASLCQNCDWNGHIAgssaagHKRQT 89 7*****************************3256677788765 PP | |||||||
3 | CCT | 64.1 | 4.1e-22 | 354 | 396 | 1 | 43 |
CCT 1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkq 43 R+ a++RYkeK+k+RkF+KkirY+sRKa+A+ R+RvKGrFvk Sobic.010G123500.1.p 354 RDSAITRYKEKKKRRKFDKKIRYASRKARADVRKRVKGRFVKV 396 899**************************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50119 | 9.94 | 1 | 47 | IPR000315 | B-box-type zinc finger |
SMART | SM00336 | 1.0E-10 | 1 | 47 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 1.57E-7 | 4 | 47 | No hit | No description |
PROSITE profile | PS50119 | 9.115 | 43 | 90 | IPR000315 | B-box-type zinc finger |
CDD | cd00021 | 2.21E-5 | 47 | 90 | No hit | No description |
SMART | SM00336 | 0.21 | 48 | 90 | IPR000315 | B-box-type zinc finger |
PROSITE profile | PS51017 | 15.338 | 354 | 396 | IPR010402 | CCT domain |
Pfam | PF06203 | 6.6E-17 | 354 | 396 | IPR010402 | CCT domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005622 | Cellular Component | intracellular | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 412 aa Download sequence Send to blast |
MGALCDFCGE QRSMVYCRSD AASLCLSCDR NVHSANALSR RHTRTLLCDR CASQPAMVRC 60 LAENASLCQN CDWNGHIAGS SAAGHKRQTI NCYSGCPSSA ELSRIWSFVS DIPNVAPEPN 120 CEQGISMMSI SDSGVSSQDN AAGDNNLLDI ASETLISDLG TCDKPLVGSS SGAGVNLLPL 180 ATDQTAGSVD SPPDKDSCVQ VPYTPDKDMF SKDSIYEDFC VDDVDLAFEN YEELFGTSHI 240 QTEQLFDDAG IDSYFEVKEA PAGNSTEQSK LKQPANSNAV SADSGMSNPG VKGDSSVCIP 300 LRQARSSLSL SFSGLTGESS AGDHQDCVVS SLLLMGEPPW QPPGPEGSIA GGSRDSAITR 360 YKEKKKRRKF DKKIRYASRK ARADVRKRVK GRFVKVGEAY DYDPLCQTRS Y* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 363 | 367 | KKKRR |
2 | 363 | 368 | KKKRRK |
3 | 364 | 368 | KKRRK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G123500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU962767 | 0.0 | EU962767.1 Zea mays clone 245350 CCT motif family protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304179.1 | 0.0 | zinc finger protein CONSTANS-LIKE 9 isoform X1 | ||||
Swissprot | Q9SSE5 | 1e-124 | COL9_ARATH; Zinc finger protein CONSTANS-LIKE 9 | ||||
TrEMBL | A0A194YJQ9 | 0.0 | A0A194YJQ9_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G013398_P04 | 0.0 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2079 | 37 | 88 | Representative plant | OGRP1375 | 13 | 34 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G48250.1 | 2e-75 | B-box type zinc finger protein with CCT domain |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G123500.1.p |