PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G115450.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GRAS | ||||||||
Protein Properties | Length: 174aa MW: 18987.7 Da PI: 7.415 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 21.8 | 2e-07 | 70 | 167 | 197 | 290 |
GRAS 197 kpgEalaVnlvlqlhrlldesvsles..erdevLklvkslsPkvvvvveqeadhnsesFlerflea...leyysalfdsleaklprese 280 +p+ +l+V + ++l++l d+++ ++ + d+vL +++++ +++++ + + ++sFl+rf + ++ alfd l+a l+ se Sobic.010G115450.1.p 70 DPDMVLVVDSLFKLETLADDNLVMDRasPLDSVLGNIRRMRQAMFTHSVVNGLC-GNSFLTRFRPSgrrSSTSQALFDVLDAMLSWGSE 157 457789**************9988776699*****************9999888.679*****987222567789************** PP GRAS 281 erikvErell 290 + +++E+ + Sobic.010G115450.1.p 158 QCRVLEQDVC 167 *999999854 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03514 | 6.8E-5 | 70 | 167 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 174 aa Download sequence Send to blast |
MADEAAMSNS KEARRRSHAH AAGELRAGGG RAVCIADVGR LQRLAHCFVE ALEAREVAVA 60 RWDAVRVGRD PDMVLVVDSL FKLETLADDN LVMDRASPLD SVLGNIRRMR QAMFTHSVVN 120 GLCGNSFLTR FRPSGRRSST SQALFDVLDA MLSWGSEQCR VLEQDVCVVN VVT* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G115450.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002450074.1 | 9e-37 | scarecrow-like protein 34 | ||||
TrEMBL | A0A1W0VSG6 | 1e-121 | A0A1W0VSG6_SORBI; Uncharacterized protein | ||||
STRING | Sb10g010016.1 | 2e-73 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G37650.1 | 2e-06 | GRAS family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G115450.1.p |