PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G111500.1.p
Common NameSb10g009660, SORBIDRAFT_10g009660
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 319aa    MW: 36138.4 Da    PI: 9.1276
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G111500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding33.97.6e-11142185447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT +E+ +++++ + +G g+Wk I+  + +++t+ q+ s+ qky
  Sobic.010G111500.1.p 142 WTIDEHRQFLRGLHVYGRGNWKNISINFVTTKTPVQVSSHAQKY 185
                           *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129413.678134190IPR017930Myb domain
SuperFamilySSF466893.07E-14138191IPR009057Homeodomain-like
SMARTSM007175.9E-7138188IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.4E-13140189IPR006447Myb domain, plants
Gene3DG3DSA:1.10.10.601.4E-7140185IPR009057Homeodomain-like
CDDcd001676.40E-8142186No hitNo description
PfamPF002491.6E-8142185IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDPKFKGEWS TSEIEMVKSL IARENANNNC PSDMNKKHNQ IVDELQALFP SKEKYQVINL  60
YIDVMVDMTR KLQSSNQHVE GSSNLMNRPF GVFVGNPYPS MGNMEAFDGY QQVEMSGTRN  120
VKETPRRKPT PRKESQHSGR FWTIDEHRQF LRGLHVYGRG NWKNISINFV TTKTPVQVSS  180
HAQKYFLRKE NRTKKQRYSI NDIGLYDVEP LPQKNTSISE GTAFGGGVYN TNQYSFGGHT  240
TSMNNVQAWS PFSYHTGHRS RSNSQMGTLA IGQQQEQMGT GISLVAPTME ANGGQLDWTS  300
DQLGDLLDTQ WMMNADMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G111500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436831.10.0transcription factor SRM1
TrEMBLC5Z8F10.0C5Z8F1_SORBI; Uncharacterized protein
STRINGSb10g009660.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.18e-22MYB family protein