PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G111400.1.p
Common NameSb10g009650, SORBIDRAFT_10g009650
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 317aa    MW: 35892.1 Da    PI: 8.8364
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G111400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding39.31.5e-12140183447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT +E+ +++++ + +G g+Wk I+r++ +++t+ q+ s+ qky
  Sobic.010G111400.1.p 140 WTIDEHRQFLRGLHVYGRGNWKNISRHFVTTKTPVQVSSHAQKY 183
                           *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.607.8E-9131186IPR009057Homeodomain-like
PROSITE profilePS5129415.465132188IPR017930Myb domain
SuperFamilySSF466898.97E-16134189IPR009057Homeodomain-like
SMARTSM007172.5E-8136186IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.3E-13138187IPR006447Myb domain, plants
CDDcd001679.39E-9140184No hitNo description
PfamPF002491.1E-9140183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDPKFKGESS AYENKMVKSL TARDNTNNNC ASDMNKKHNQ IVDELQAMFP SKEKEQVTNM  60
YMDVMVEMTQ TLQSGNQHVE ASSKLMNQPF GVIVGDPSMG NMEAFDGYQK VEMLGPRNVK  120
QTPWRKPTPW KDNQRTGRFW TIDEHRQFLR GLHVYGRGNW KNISRHFVTT KTPVQVSSHA  180
QKYFLRKENS TKKQRYSIND IGLYDFGPLS QTNAPAWVGP TFGGGVYNIN HYSFGGHPTS  240
MNNAQAWSPF LYQTRRGSIS NSLTTTLAVD QQQEQMGASS SLVDPTTEAD GGHLDWTSDN  300
LRDILDTQWM INANMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G111400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436829.10.0uncharacterized protein LOC8065782
TrEMBLC5Z8E90.0C5Z8E9_SORBI; Uncharacterized protein
STRINGSb10g009650.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.13e-22MYB family protein