PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G109700.1.p
Common NameSb10g009580, SORBIDRAFT_10g009580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 317aa    MW: 35890.3 Da    PI: 8.6583
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G109700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding361.6e-11140183447
                           S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                           WT  E+ +++++ + +G g+Wk I++++ +++t+ q+ s+ qky
  Sobic.010G109700.1.p 140 WTINEHRQFLRGLHVYGRGNWKNISKHFVTTKTPVQVSSHAQKY 183
                           *******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129414.404132188IPR017930Myb domain
SMARTSM007177.0E-7136186IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.7E-8138183IPR009057Homeodomain-like
SuperFamilySSF466895.23E-15138188IPR009057Homeodomain-like
TIGRFAMsTIGR015574.8E-13139187IPR006447Myb domain, plants
CDDcd001678.56E-8140184No hitNo description
PfamPF002493.7E-9140183IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 317 aa     Download sequence    Send to blast
MDPKLKGEWS AYEIMMVKSL IARDNTNNNY VGDMNKKHNQ IVDELQAMFP SKEKYQVTNL  60
YIDVMVEMTQ TLQSGNQHVE ASSNLINQPF GVFVGDPSMG NKEAFDGYKQ VEMFGMRNVM  120
ETPRNRPTPR KDSQHIGRFW TINEHRQFLR GLHVYGRGNW KNISKHFVTT KTPVQVSSHA  180
QKYFLRKENG TKKQRYSIND IGLYDFEPLP QTNASAWEGH TSGGGVYNTN QYRFGGHPTS  240
MSNAQAWSPF LYHTVHTSRS NSLMASLAIG QQQEQMGASS SLVAPTMEAD GGHLELTSDK  300
LGNLFDTQWM MNADMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G109700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438206.10.0transcription factor SRM1
TrEMBLC5Z8450.0C5Z845_SORBI; Uncharacterized protein
STRINGSb10g009580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G38090.12e-22MYB family protein