PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G108500.1.p
Common NameSb10g009480, SORBIDRAFT_10g009480
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family CO-like
Protein Properties Length: 475aa    MW: 50338.9 Da    PI: 5.0156
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G108500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box24.36.4e-082263338
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHkg......Ht 38
                          +r C+ + + +++++C  ++ +lC+ C ++ H+       H+
  Sobic.010G108500.1.p 22 ARACDGCLRRRARWYCAADDAFLCQGCDTSVHSAnplarrHE 63
                          678*****************************6567777776 PP
2CCT67.63.3e-23418461144
                   CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                           Rea+++RY+eKr+tR+F+KkirYe+RK +Ae+RpR+KGrFvk+a
  Sobic.010G108500.1.p 418 REARVSRYREKRRTRLFSKKIRYEVRKLNAEKRPRMKGRFVKRA 461
                           9*****************************************86 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.6232067IPR000315B-box-type zinc finger
SMARTSM003363.9E-112067IPR000315B-box-type zinc finger
PfamPF006431.3E-62264IPR000315B-box-type zinc finger
CDDcd000212.95E-92367No hitNo description
PfamPF062038.2E-18418460IPR010402CCT domain
PROSITE profilePS5101716.083418460IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0016020Cellular Componentmembrane
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 475 aa     Download sequence    Send to blast
MIATTGSSAK TAAAAAVGGK SARACDGCLR RRARWYCAAD DAFLCQGCDT SVHSANPLAR  60
RHERLRLQPA AASSSPLHTP PRTGAAANNK RERHDEVVPA WFRRKARTPR GGHAKSVGGQ  120
ALSRSRRLGV VVPHAAAGGG DSPDDGRSAE GEFEAEEEQL LYRVPIFDPA LAEFCSPPPA  180
PLEDAAALAS SCNEDGAVED PANSKPDPGP ATPAPAPVVQ FFPDSGHANF EPTDAELREF  240
AADMEALLGH GLDDGNEEDS SFYMETLGLL DPVEVGDDAT RVKVETDGGS ACGEASGTLA  300
CALELLDPAE VSDEMLDIDF NYGSPLDTMM DDEKAASSDT GGADDAQFLQ TSLSLTLNYE  360
AIIQSWGSSP WTAGGERPHV KLDDSWPHTN MWVVGGVAGH GGEDLLLGTA RLGMDGGREA  420
RVSRYREKRR TRLFSKKIRY EVRKLNAEKR PRMKGRFVKR ATAGGSSLAI AGLA*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1428444RRTRLFSKKIRYEVRKL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G108500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436824.10.0zinc finger protein CONSTANS-LIKE 16
TrEMBLC5Z8360.0C5Z836_SORBI; Uncharacterized protein
STRINGSb10g009480.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP32833058
Representative plantOGRP8021649
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G25440.11e-66B-box type zinc finger protein with CCT domain