PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G104100.1.p
Common NameSb10g009070, SORBIDRAFT_10g009070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-X1
Protein Properties Length: 1124aa    MW: 120424 Da    PI: 8.2335
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G104100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X120.79.2e-07396413118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG+H C+ lCH+GpC++C
  Sobic.010G104100.1.p 396 CGNHACKDLCHPGPCGEC 413
                           ****************** PP
2zf-NF-X118.93.3e-06454471118
              zf-NF-X1   1 CGkHkCqklCHeGpCppC 18 
                           CG H+C+  CHeG+CppC
  Sobic.010G104100.1.p 454 CGVHRCKVNCHEGECPPC 471
                           ****************** PP
3zf-NF-X117.96.9e-06549567119
              zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                           CG+H Cq lCH G CppC 
  Sobic.010G104100.1.p 549 CGQHACQLLCHSGHCPPCL 567
                           ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578507.65E-7149224No hitNo description
PROSITE profilePS500899.081159218IPR001841Zinc finger, RING-type
PROSITE patternPS013590159217IPR019786Zinc finger, PHD-type, conserved site
SMARTSM004380.023277295IPR000967Zinc finger, NF-X1-type
PfamPF014228.4279294IPR000967Zinc finger, NF-X1-type
CDDcd060086.97E-11322370No hitNo description
SMARTSM004380.01332351IPR000967Zinc finger, NF-X1-type
PfamPF014220.16334349IPR000967Zinc finger, NF-X1-type
CDDcd060082.44E-9386429No hitNo description
SMARTSM004384.5E-4396415IPR000967Zinc finger, NF-X1-type
PfamPF014221.8E-4396413IPR000967Zinc finger, NF-X1-type
CDDcd060084.99E-13444492No hitNo description
SMARTSM004384.2E-4454473IPR000967Zinc finger, NF-X1-type
PfamPF014225.1E-5454471IPR000967Zinc finger, NF-X1-type
SMARTSM00438230510522IPR000967Zinc finger, NF-X1-type
PfamPF014222.3510521IPR000967Zinc finger, NF-X1-type
CDDcd060084.64E-8539591No hitNo description
SMARTSM004382.2E-4549568IPR000967Zinc finger, NF-X1-type
PfamPF014221.6E-4549566IPR000967Zinc finger, NF-X1-type
SMARTSM004380.35606624IPR000967Zinc finger, NF-X1-type
PfamPF0142249606622IPR000967Zinc finger, NF-X1-type
SMARTSM004380.57659694IPR000967Zinc finger, NF-X1-type
PfamPF014220.019659674IPR000967Zinc finger, NF-X1-type
PfamPF0142210696722IPR000967Zinc finger, NF-X1-type
SMARTSM004380.32703724IPR000967Zinc finger, NF-X1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000122Biological Processnegative regulation of transcription from RNA polymerase II promoter
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000977Molecular FunctionRNA polymerase II regulatory region sequence-specific DNA binding
GO:0001078Molecular Functiontranscriptional repressor activity, RNA polymerase II core promoter proximal region sequence-specific binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1124 aa     Download sequence    Send to blast
MQPSTDRRRG GGPVATASRS EWRPRPRPSP AGAASAPGPA AGPDASAGPI LPLPTTPASE  60
ARPSHRRSRR SNHGSNNNGN NNHSRRSAPA PPQEQNDNAR YRRRGPPPER PAPAPTAPAR  120
ERAPAPAPAP AAAATRGDGA VPQLVQEIQD KLARGAVECM ICYDMVRRSA PVWSCASCFS  180
IFHLPCIRKW VRSPASAADA SPAAADPASP SWRCPGCQSV YATPARDLAY TCFCGSRRDP  240
PNDHFLTPHS CGEPCSRPLE RAEPPGAKGE DADATRCPHV CVLQCHPGPC PPCKAFAPDR  300
PCPCGKQIIV RRCADRSTPV TCGRPCEQML PCKRHRCEKV CHTGSCGDCA VLISARCFCG  360
KKNETLLCGD MMVKGKLSEE DGVFSCNEVC GRTLACGNHA CKDLCHPGPC GECELMPGKV  420
STCHCGKTRL QERRASCLDA IPTCDKICDK KLPCGVHRCK VNCHEGECPP CLVRVEQKCR  480
CGSSGQMVEC YKVAMEEFRC NKPCGRKKNC GRHRCSELCC PLSRKVAQIE GGNWDPHLCQ  540
ISCGKKLRCG QHACQLLCHS GHCPPCLETI FTDLTCACGR TSLPPPLPCG TPTPSCPHQC  600
SVPQPCGHPA SHSCHFGDCP PCIVPVMREC IGGHVMLRNI PCGSKDIRCN QPCGKNRQCG  660
IHACNRPCHP PPCDQTPANG DASSSSGGKA SCGQVCGAAR RECKHTCTAP CHPSSQCPDL  720
RCEFAVTITC SCGRITATVP CGAGGSSMSD NMFEVSIIQK LPMPLQPVES NGRRVPLGQR  780
KISCDEECAK MEKKRVLAEA FDITPPNLDA LHFGENSGSS DLVSDLFRRE PKWVLAIEER  840
CKFLVLGKVR GSSSSNLKLH VFCPMLKDKR DAIRLIAERW KLSVKSACCE PKRFVTIHVT  900
PKSKPPARIL GSKAGAPVTA AHPYFDPLVD MDPRLVVTML DLPRDADVNA LVLRFGGECE  960
LVWLNDKNAI AVFNDPARAA TALRRLDYGS AYQGAAMFMP SSAQASSSGN VWTGEHKDGG  1020
LTARSNPWKK PDLPSGDWTG VAGHAPAPGW RGANTATQVM GTANRWNVLE SDTAASSGSG  1080
DERKPAPRTD AAYSAIPNAG NAGPSVTKLQ PDVEVDDWEE ACE*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.71040.0panicle
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in seedlings, roots, stems, leaves, buds, flowers and siliques. {ECO:0000269|PubMed:16905136}.
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G104100.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305299.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A1W0VSC20.0A0A1W0VSC2_SORBI; Uncharacterized protein
STRINGSb10g009070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP61303543
Representative plantOGRP39501420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10170.10.0NF-X-like 1