PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G089700.1.p
Common NameSb10g007780, SORBIDRAFT_10g007780
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 368aa    MW: 38775.9 Da    PI: 6.2326
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G089700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.15e-19182230355
                   AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           ++GVr+++ +g+WvAeIr p++   r+r +lg+f++ae+Aa a+++a+ +l+g
  Sobic.010G089700.1.p 182 FRGVRQRH-WGKWVAEIRLPRN---RTRLWLGTFDSAEDAALAYDKAAFRLRG 230
                           8******9.**********955...5*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.98E-30180238No hitNo description
SuperFamilySSF541711.18E-21181238IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.103.1E-31181239IPR001471AP2/ERF domain
PROSITE profilePS5103222.669181238IPR001471AP2/ERF domain
SMARTSM003808.8E-36181244IPR001471AP2/ERF domain
PfamPF008471.1E-12182230IPR001471AP2/ERF domain
PRINTSPR003678.2E-10182193IPR001471AP2/ERF domain
PRINTSPR003678.2E-10204220IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 368 aa     Download sequence    Send to blast
MAAIDLYTNQ LSSSSSSSSD QELMKALEPF IRSASSPTSS TSTTTSPFSY SYPYCSALPQ  60
DSYYLPATSS YTSFPPPPPA PTAATSFSQL PPLPQSSSSY ASPAAASYPT SSSADAASGL  120
AALNHLGPAA QIHQIQAQLL AQHQEQQQQQ RGLLAAAAFL GPRATQPMKH AGAPSASSAK  180
LFRGVRQRHW GKWVAEIRLP RNRTRLWLGT FDSAEDAALA YDKAAFRLRG DAARLNFPSL  240
RRGGVHLAGP LDASVDAKLT AICQGLTTAE PASSKAADTD ASTTATAAPD SPKASASTTT  300
TEGDESVHSA GSPPSSLPAF FQPPPPPQQQ HPEMVSLDFT EAPWDESAAL HLNKYPSWEI  360
DWDSILS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A1e-19177238163ATERF1
3gcc_A1e-19177238163ATERF1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.13570.0ovary| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G089700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3650401e-114AK365040.1 Hordeum vulgare subsp. vulgare mRNA for predicted protein, complete cds, clone: NIASHv2030H17.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438081.10.0ethylene-responsive transcription factor RAP2-13
TrEMBLC5Z6Z40.0C5Z6Z4_SORBI; Uncharacterized protein
STRINGSb10g007780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP38235203
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78080.11e-38related to AP2 4