PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G080400.1.p
Common NameSb10g006980, SORBIDRAFT_10g006980
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 239aa    MW: 24436.1 Da    PI: 4.4727
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G080400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP249.41.1e-153280355
                   AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55
                          ykGVr ++ +g+Wv+e+r p   g+++r++lg++ ta+ Aa+a++aa ++l+g
  Sobic.010G080400.1.p 32 YKGVRMRS-WGSWVSEVRAP---GQKTRIWLGSHSTADAAARAYDAALLCLKG 80
                          9****998.*******9998...557************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003801.8E-273196IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.107.0E-263190IPR001471AP2/ERF domain
SuperFamilySSF541717.85E-163191IPR016177DNA-binding domain
PROSITE profilePS5103220.2573190IPR001471AP2/ERF domain
PRINTSPR003677.7E-83243IPR001471AP2/ERF domain
CDDcd000186.99E-153290No hitNo description
PfamPF008471.6E-93280IPR001471AP2/ERF domain
PRINTSPR003677.7E-85470IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 239 aa     Download sequence    Send to blast
MVKTALVASS NDHAAASAAS AKHGGGGKQR TYKGVRMRSW GSWVSEVRAP GQKTRIWLGS  60
HSTADAAARA YDAALLCLKG SAATADLNFP LRLPFDLPPA AMSPKAIQRV AAAAAAASSS  120
CATPFAPCAE NNSGSSACTD GDATPAWSSS SPASDADVSS PESTVSSESD LSGDAVDYSS  180
LADIDAFFQS PKCMDYALMD PCSAFFAPPA SMAMHDDDGC CWVEDGGIAL WSFSNLDC*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A5e-111590472Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G080400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAP0046872e-92AP004687.2 Oryza sativa Japonica Group genomic DNA, chromosome 6, PAC clone:P0021C04.
GenBankAP0149622e-92AP014962.1 Oryza sativa Japonica Group DNA, chromosome 6, cultivar: Nipponbare, complete sequence.
GenBankCP0126142e-92CP012614.1 Oryza sativa Indica Group cultivar RP Bio-226 chromosome 6 sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436681.11e-170ethylene-responsive transcription factor ERF014
TrEMBLC5Z6F41e-168C5Z6F4_SORBI; Uncharacterized protein
STRINGSb10g006980.11e-169(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP31973469
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G44830.11e-23ERF family protein