PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G075100.1.p
Common NameSb10g006570, SORBIDRAFT_10g006570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 319aa    MW: 36199.7 Da    PI: 7.0105
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G075100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.31.3e-11138182347
                           SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                            WT+eE+  ++++   +G g+Wk I+r++ ++Rt+ q+ s+ qky
  Sobic.010G075100.1.p 138 FWTKEEHRNFLHGLVVFGRGDWKNISRYFVTTRTPMQVSSHAQKY 182
                           5*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0071764467IPR001005SANT/Myb domain
PROSITE profilePS5129413.478127187IPR017930Myb domain
SuperFamilySSF466891.35E-15133188IPR009057Homeodomain-like
SMARTSM007171.5E-9135185IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.0E-13138185IPR006447Myb domain, plants
PfamPF002492.6E-8139182IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.601.2E-8139184IPR009057Homeodomain-like
CDDcd001671.20E-8139183No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 319 aa     Download sequence    Send to blast
MDLNSGEWNA SEIMMAKDLI ASHNTNNNYA YNMYKKHTDN IVDVLQARFP TKGKHQVINL  60
YVDLMVEMLQ TMLSNDHHAT SSSNLVHEES KMSLDVLAME SMDMLGGYPV ESGAKRKAEE  120
APCRQLAPPT KRQRPMKFWT KEEHRNFLHG LVVFGRGDWK NISRYFVTTR TPMQVSSHAQ  180
KYFRRMDSTT KQRCSINDVG LYDVEPWLQN NASSLEGLTF NGATYNPKHN GTSGHLTAMN  240
NLDQQIGLPS LYHADRTSNN NSLAATLVVG QQQQQQQMWA SGSHVALVME RNSNKTTWAG  300
DQEGDFLIDQ WMMNMDMN*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G075100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002438020.10.0transcription factor DIVARICATA
TrEMBLC5Z6140.0C5Z614_SORBI; Uncharacterized protein
STRINGSb10g006570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.15e-21MYB family protein