PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G071700.1.p
Common NameSb10g006260, SORBIDRAFT_10g006260
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 359aa    MW: 39514.1 Da    PI: 4.6733
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G071700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2591.2e-18115164255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +++G+r+++ +g+W+AeIrdp++     r++lg+f ++eeAa+a++a +++++g
  Sobic.010G071700.1.p 115 QFRGIRRRP-WGKWAAEIRDPRK---GVRVWLGTFNSPEEAARAYDAEARRIRG 164
                           69*******.**********954...4************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000186.00E-32115173No hitNo description
Gene3DG3DSA:3.30.730.108.9E-31115173IPR001471AP2/ERF domain
PROSITE profilePS5103223.644115172IPR001471AP2/ERF domain
SuperFamilySSF541711.11E-21115174IPR016177DNA-binding domain
SMARTSM003801.4E-34115178IPR001471AP2/ERF domain
PRINTSPR003674.9E-10116127IPR001471AP2/ERF domain
PfamPF008472.1E-11116164IPR001471AP2/ERF domain
PRINTSPR003674.9E-10138154IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0070483Biological Processdetection of hypoxia
GO:0005634Cellular Componentnucleus
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 359 aa     Download sequence    Send to blast
MCGGAILSDI IPPPPRRVTA GHLWPESKKP RRGAGAGRRR AGPPVEEEEE EEDFEADFEV  60
FEVESGESEL ESEDEAKPFA APRTRSALPR DGLNTSAVVV DGPAANSVKR KRKNQFRGIR  120
RRPWGKWAAE IRDPRKGVRV WLGTFNSPEE AARAYDAEAR RIRGKKAKVN FPDEVSTIPQ  180
KHRAGPTPLK VPEMDFEEKP IIKPAVNNMT NSNAYHYPVV DHNIPEPFMH TQNMSFAPFV  240
NSAAPIQEPF VNLSSDQGSN SFSCSDFSLE NDTRTPDITS VVVGESAFVQ NTGPAVVPPL  300
MGNASVDLTE LDPYMNFLMD SGSEDSINTL LSCDGSQDVV SNMDLWSFDD MPMSAGFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A6e-201141761376Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1108122KRKRKNQFRGIRRRP
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.143880.0embryo| leaf| ovary| panicle| root
Functional Description ? help Back to Top
Source Description
UniProtProbable transcriptional activator that may be involved in defense signaling pathway. Binds in vitro to the DNA sequence 5'-AGCCGCC-3' of the GCC-box element found in pathogenesis-related (PR) gene promoters. The transcriptional activation is enhanced in vitro by the presence of MPK12/BWMK1. {ECO:0000269|PubMed:12913152}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00204DAPTransfer from AT1G53910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G071700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436631.10.0ethylene-responsive transcription factor 1
SwissprotQ6K7E61e-122ERF1_ORYSJ; Ethylene-responsive transcription factor 1
TrEMBLC5Z5Y30.0C5Z5Y3_SORBI; Uncharacterized protein
STRINGSb10g006260.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP103938134
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G53910.33e-44related to AP2 12
Publications ? help Back to Top
  1. Kim CY, et al.
    Identification of rice blast fungal elicitor-responsive genes by differential display analysis.
    Mol. Plant Microbe Interact., 2000. 13(4): p. 470-4
    [PMID:10755311]
  2. Koo SC, et al.
    OsBWMK1 mediates SA-dependent defense responses by activating the transcription factor OsWRKY33.
    Biochem. Biophys. Res. Commun., 2009. 387(2): p. 365-70
    [PMID:19607808]
  3. Iwamoto M,Takano M
    Phytochrome-regulated EBL1 contributes to ACO1 upregulation in rice.
    Biotechnol. Lett., 2011. 33(1): p. 173-8
    [PMID:20872166]
  4. Serra TS, et al.
    OsRMC, a negative regulator of salt stress response in rice, is regulated by two AP2/ERF transcription factors.
    Plant Mol. Biol., 2013. 82(4-5): p. 439-55
    [PMID:23703395]
  5. Jisha V, et al.
    Overexpression of an AP2/ERF Type Transcription Factor OsEREBP1 Confers Biotic and Abiotic Stress Tolerance in Rice.
    PLoS ONE, 2015. 10(6): p. e0127831
    [PMID:26035591]
  6. Lourenço TF, et al.
    The Rice E3-Ubiquitin Ligase HIGH EXPRESSION OF OSMOTICALLY RESPONSIVE GENE1 Modulates the Expression of ROOT MEANDER CURLING, a Gene Involved in Root Mechanosensing, through the Interaction with Two ETHYLENE-RESPONSE FACTOR Transcription Factors.
    Plant Physiol., 2015. 169(3): p. 2275-87
    [PMID:26381316]