PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G063900.1.p
Common NameSb10g005520, SORBIDRAFT_10g005520
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 182aa    MW: 19368.7 Da    PI: 6.7968
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G063900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.21e-18756255
                   AP2  2 gykGVrwdkkrgrWvAeIrdpsengkr..krfslgkfgtaeeAakaaiaarkkleg 55
                          +y+GVr+++ +g+Wv+eIr+p        +r++lg+f tae+Aa+a+++a++ + g
  Sobic.010G063900.1.p  7 RYRGVRQRH-WGSWVSEIRHP-----LlkTRIWLGTFETAEDAARAYDEAARIMCG 56
                          69******9.**********8.....334**********************98765 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.96E-30665No hitNo description
SMARTSM003801.0E-36770IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.2E-33765IPR001471AP2/ERF domain
PfamPF008472.9E-11755IPR001471AP2/ERF domain
SuperFamilySSF541711.83E-20765IPR016177DNA-binding domain
PROSITE profilePS5103220.692764IPR001471AP2/ERF domain
PRINTSPR003672.9E-11819IPR001471AP2/ERF domain
PRINTSPR003672.9E-113046IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MARPQQRYRG VRQRHWGSWV SEIRHPLLKT RIWLGTFETA EDAARAYDEA ARIMCGPRVR  60
TNFPEDAAGA GDGQQQQQAA SSFLSPALVA KLHRFNLASV QAARGKADAA SAAAASAPAV  120
LPRIAAMPAG NAAMGGIAPS PPPPPSSSSA GDWSGGFLEE QYVDQMIEEL LDSNFSMEIS  180
Y*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A6e-16664463ATERF1
3gcc_A6e-16664463ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00526DAPTransfer from AT5G25190Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G063900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436602.11e-130protein PPLZ02
TrEMBLC5Z5G91e-128C5Z5G9_SORBI; Uncharacterized protein
STRINGSb10g005520.11e-129(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP141835118
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G25190.17e-35ERF family protein