PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G058000.1.p
Common NameSb10g005020, SORBIDRAFT_10g005020
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 307aa    MW: 34723.8 Da    PI: 9.4781
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G058000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding36.88.9e-12133178247
                           SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                             WTt+E+  ++ + + +G  +Wk I++++ ++Rt+ q+ s+ qky
  Sobic.010G058000.1.p 133 RFWTTDEHRNFLYGLRAFGRSDWKNISKHFVTTRTPVQISSHAQKY 178
                           56*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.604.4E-10125181IPR009057Homeodomain-like
PROSITE profilePS5129415.308127183IPR017930Myb domain
SuperFamilySSF466891.42E-15129184IPR009057Homeodomain-like
SMARTSM007171.1E-9131181IPR001005SANT/Myb domain
TIGRFAMsTIGR015573.6E-14131181IPR006447Myb domain, plants
PfamPF002492.5E-8135178IPR001005SANT/Myb domain
CDDcd001671.25E-7135179No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 307 aa     Download sequence    Send to blast
MDPNYGEWNA SEIKIVKDLI ASHNANSTSA NDINNKQIDI VDVLQARFPT KEKHKVTNLY  60
ADLMVENMHM MLSGNQHAMV SSKLVNDKFR MPVEHPTMDV SSGDLVEERK AKRKAGEDSH  120
SQPDPQKERQ RRRFWTTDEH RNFLYGLRAF GRSDWKNISK HFVTTRTPVQ ISSHAQKYFR  180
RMENTTKRQR SSINDVGLCD DEPKVQTNAS SLQGFTFTNG TYNSNHYGSN NSQFVAMSNL  240
AKQMWFPSLC CTGQASSSSS NQATTLNRGE AGGSYVAPKM EGAESKTKLS SGEAEDFLFD  300
KWMMRK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G058000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002437932.10.0probable transcription factor At5g61620
TrEMBLC5Z5B50.0C5Z5B5_SORBI; Uncharacterized protein
STRINGSb10g005020.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP84230133
Representative plantOGRP2767530
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01200.12e-24MYB family protein