PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G056000.1.p
Common NameSb10g004880, SORBIDRAFT_10g004880
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family BBR-BPC
Protein Properties Length: 349aa    MW: 38116.3 Da    PI: 10.3311
Description BBR-BPC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G056000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GAGA_bind332.51.1e-10133482301
             GAGA_bind   2 dddgsre.rnkgyyepaaslkenlglqlmssia.erdaki..........rernlalsekkaavaerd..................... 57 
                           d+dgs   rn+g+y+     k nlglqlmss++ +rd+k           + ++ a ++                              
  Sobic.010G056000.1.p   3 DEDGSLGiRNWGFYDTV---KGNLGLQLMSSVPpDRDTKSllpngaflqhHGHHNAPHQL-------Hmqhsqhprgpagggasggmpt 81 
                           45677778******987...************99******77777666653333333333.......02333344669*********** PP

             GAGA_bind  58 ......maflqrdkalaernkalverdnkllalllvensla.................salpvgvqvlsgtksi.dslqqlsepqleds 122
                                 m+f +++++l++  ++  + ++k+l+  +++ +                   +++p+g++++s+++++ +++q + e+ql+++
  Sobic.010G056000.1.p  82 esqpihMDFSRNEAWLHQ-SHHQRPSEQKVLHSRPIRPAGHaghpghgghpahvghivHHHPTGYGMVSDAQHTlQMMQPQLETQLQEP 169
                           ******************.88889999****99998877667889*************9********9998765166666889999998 PP

             GAGA_bind 123 avelreeeklealpieeaaeeake...kkkkkkrqrakkpkekkakkkkkksekskkkvkkesaderskaekksidlvlngvslDestl 208
                           +    +ee+   + ie++a +++    kkk++ rq++++pk++k kk+kk  +++ ++ + +++ +r++ +kk++++v+ng++lD +t+
  Sobic.010G056000.1.p 170 PPC--KEEEAPPPLIEDHAVVSTGppvKKKQRGRQQNRQPKSPKPKKPKK-IAVPLEDGALNGHAPRRRGPKKTVGMVINGIELDLATI 255
                           876..44445566666666655541112333446788999999999*999.779999******99************************ PP

             GAGA_bind 209 PvPvCsCtGalrqCYkWGnGGWqSaCCtttiSvyPLPvstkrrgaRiagrKmSqgafkklLekLaaeGydlsnpvDLkdhWAkHGtnkf 297
                           P+PvCsCtGa++qCY+WG GGWqSaCCtt+iS+yPLP+stkrrgaRi+grKmSqgafkk+LekLa+eGy+l+np+DLk++WAkHGtnkf
  Sobic.010G056000.1.p 256 PTPVCSCTGAPQQCYRWGPGGWQSACCTTSISTYPLPMSTKRRGARISGRKMSQGAFKKVLEKLAGEGYNLANPIDLKTFWAKHGTNKF 344
                           ***************************************************************************************** PP

             GAGA_bind 298 vtir 301
                           vtir
  Sobic.010G056000.1.p 345 VTIR 348
                           ***8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM012265.0E-1901348IPR010409GAGA-binding transcriptional activator
PfamPF062172.3E-1153348IPR010409GAGA-binding transcriptional activator
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0050793Biological Processregulation of developmental process
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 349 aa     Download sequence    Send to blast
MDDEDGSLGI RNWGFYDTVK GNLGLQLMSS VPPDRDTKSL LPNGAFLQHH GHHNAPHQLH  60
MQHSQHPRGP AGGGASGGMP TESQPIHMDF SRNEAWLHQS HHQRPSEQKV LHSRPIRPAG  120
HAGHPGHGGH PAHVGHIVHH HPTGYGMVSD AQHTLQMMQP QLETQLQEPP PCKEEEAPPP  180
LIEDHAVVST GPPVKKKQRG RQQNRQPKSP KPKKPKKIAV PLEDGALNGH APRRRGPKKT  240
VGMVINGIEL DLATIPTPVC SCTGAPQQCY RWGPGGWQSA CCTTSISTYP LPMSTKRRGA  300
RISGRKMSQG AFKKVLEKLA GEGYNLANPI DLKTFWAKHG TNKFVTIR*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Ubiquitously expressed. {ECO:0000269|PubMed:12795701}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds to GA-rich elements (GAGA-repeats) present in regulatory sequences of genes involved in developmental processes. Positively regulates the homeotic gene BKN3. {ECO:0000269|PubMed:12795701}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00253DAPTransfer from AT2G01930Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G056000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0331970.0BT033197.1 Zea mays full-length cDNA clone ZM_BFb0064P02 mRNA, complete cds.
GenBankBT0645980.0BT064598.1 Zea mays full-length cDNA clone ZM_BFc0188M02 mRNA, complete cds.
GenBankEU9663700.0EU966370.1 Zea mays clone 293939 GAGA-binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305278.10.0protein Barley B recombinant
RefseqXP_021305279.10.0protein Barley B recombinant
RefseqXP_021305280.10.0protein Barley B recombinant
RefseqXP_021305281.10.0protein Barley B recombinant
RefseqXP_021305282.10.0protein Barley B recombinant
RefseqXP_021305283.10.0protein Barley B recombinant
RefseqXP_021305285.10.0protein Barley B recombinant
RefseqXP_021305286.10.0protein Barley B recombinant
RefseqXP_021305287.10.0protein Barley B recombinant
RefseqXP_021305288.10.0protein Barley B recombinant
RefseqXP_021305289.10.0protein Barley B recombinant
RefseqXP_021305290.10.0protein Barley B recombinant
RefseqXP_021305291.10.0protein Barley B recombinant
RefseqXP_021305292.10.0protein Barley B recombinant
RefseqXP_021305293.10.0protein Barley B recombinant
RefseqXP_021305294.10.0protein Barley B recombinant
RefseqXP_021305295.10.0protein Barley B recombinant
SwissprotQ8GUC31e-137BBR_HORVU; Protein Barley B recombinant
TrEMBLC5Z5060.0C5Z506_SORBI; Uncharacterized protein
STRINGSb10g004880.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22113697
Representative plantOGRP18651240
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G14685.32e-62basic pentacysteine 2