PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G052600.1.p
Common NameSb10g004580, SORBIDRAFT_10g004580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 202aa    MW: 20357.7 Da    PI: 10.4946
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G052600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.55.8e-1757106255
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                           +y+GVr +k +g+WvAeIr+p   +kr r++lg++ ta  Aa+a++ a  +l+g
  Sobic.010G052600.1.p  57 QYRGVRMRK-WGKWVAEIREP---NKRSRIWLGSYSTAVAAARAYDTAVFYLRG 106
                           69*****99.**********9...336*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.104.6E-3156115IPR001471AP2/ERF domain
PROSITE profilePS5103222.97257114IPR001471AP2/ERF domain
SMARTSM003802.8E-3757120IPR001471AP2/ERF domain
PfamPF008471.7E-1057106IPR001471AP2/ERF domain
CDDcd000188.06E-2757116No hitNo description
SuperFamilySSF541719.81E-2257116IPR016177DNA-binding domain
PRINTSPR003675.6E-125869IPR001471AP2/ERF domain
PRINTSPR003675.6E-1296116IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 202 aa     Download sequence    Send to blast
MERDATAFCP PPQPAPAAPV SVPPATVLGA GGGAVAAAAG HGRGGGGGGG GGGGGRQYRG  60
VRMRKWGKWV AEIREPNKRS RIWLGSYSTA VAAARAYDTA VFYLRGRSAR LNFPDQLDGA  120
AVADNPEGHR DGGAGAGLTA AAIRKKAAEV GARVDALHCG VGVGLAGGGA ASPQPLSSHH  180
RRRPKNPDLN REPTPDTSDD E*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-1655118367ATERF1
3gcc_A7e-1655118367ATERF1
5wx9_A8e-1647118476Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14255RGGGGGGGGGGGGR
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.52470.0callus| ovary| pollen| root
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00276DAPTransfer from AT2G23340Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G052600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9556821e-117EU955682.1 Zea mays clone 1542257 dehydration responsive element binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436552.11e-139ethylene-responsive transcription factor RAP2-1
SwissprotO221746e-45ERF08_ARATH; Ethylene-responsive transcription factor ERF008
TrEMBLC5Z4W71e-138C5Z4W7_SORBI; Uncharacterized protein
STRINGSb10g004580.11e-139(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP39433075
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G23340.11e-29DREB and EAR motif protein 3
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sazegari S,Niazi A,Ahmadi FS
    A study on the regulatory network with promoter analysis for Arabidopsis DREB-genes.
    Bioinformation, 2015. 11(2): p. 101-6
    [PMID:25848171]