PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G052500.1.p
Common NameSb10g004570, SORBIDRAFT_10g004570
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 397aa    MW: 44234.6 Da    PI: 6.8876
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G052500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H220.99.5e-07150173123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           y+C  Cg++F+++ +L+rH r  H
  Sobic.010G052500.1.p 150 YSCAVCGRRFPTRPDLTRHFRQlH 173
                           99*****************99877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576671.56E-5148176No hitNo description
Gene3DG3DSA:3.30.160.601.1E-4149176IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM003552.9E-4150173IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015713.256150178IPR007087Zinc finger, C2H2
PROSITE patternPS000280152173IPR007087Zinc finger, C2H2
CDDcd061672.14E-8216300No hitNo description
Gene3DG3DSA:3.40.50.10101.8E-4225289IPR029060PIN domain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 397 aa     Download sequence    Send to blast
MPLALSFLHL PPNTAPFHSF QVHRTHHSHL HLSLRTRRAS ATVAAAEAEN PSASADVEMV  60
RGRDGVWTAR SPTVVVLWDL DNKPPRGPPF PAATALIGAA SLLGRVVSVS AFANRHAFSH  120
LPVWVTAERR DRRALDRAER AGVVAPSVPY SCAVCGRRFP TRPDLTRHFR QLHERERNKK  180
LSRLRSLKGK KRQKFRERFI SGNTKYEDAA RELLTPKVGY GLASELRRAG VHVRTVSDKP  240
QAADHALKRQ VKHSVACGVD WVVLVSDDSD FTDTVRNARA ADLRTVVVGD GCRALGKVAD  300
IWLPWDRVEN GEVDEEMLRS CTFAEYREDQ EDERGEQFIG DWDASAFDDV VDDIVGMRTN  360
LLGATTISAF ADEDITDGIF DSMFWSSDDE EEDGYL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.15140.0embryo| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G052500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9677610.0EU967761.1 Zea mays clone 305881 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436551.10.0uncharacterized protein LOC8070886
RefseqXP_021305770.10.0uncharacterized protein LOC8070886
TrEMBLC5Z4W60.0C5Z4W6_SORBI; Uncharacterized protein
STRINGSb10g004570.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP98063234
Representative plantOGRP30481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G52010.16e-92C2H2-like zinc finger protein