PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G047500.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 335aa    MW: 35046.1 Da    PI: 4.7768
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G047500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.3e-19111161155
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                           ++y+GVr+++ +g+++AeIrdp     +  r++lg+f+taeeAa+ ++  +++l+g
  Sobic.010G047500.1.p 111 PRYRGVRRRP-WGKYAAEIRDPH----KgERVWLGTFDTAEEAARKYDSEARRLRG 161
                           68********.**********72....35*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008476.0E-12111161IPR001471AP2/ERF domain
CDDcd000181.12E-30111171No hitNo description
PROSITE profilePS5103223.275112169IPR001471AP2/ERF domain
SuperFamilySSF541711.37E-21112170IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.101.7E-30112170IPR001471AP2/ERF domain
SMARTSM003805.2E-33112175IPR001471AP2/ERF domain
PRINTSPR003671.2E-10113124IPR001471AP2/ERF domain
PRINTSPR003671.2E-10135151IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 335 aa     Download sequence    Send to blast
MVEAAAVVHK AAAAVMRSSS QKKIKQEPAE TTTIRKLVRV FCEDRDATDS SGDEAAAGDG  60
ASGARGVRKF VKEIVLEERR PCCDVTANPV PAGRIAGGGK RKAPAGAGAE PRYRGVRRRP  120
WGKYAAEIRD PHKGERVWLG TFDTAEEAAR KYDSEARRLR GPSATTNFPA APTTRPDRVP  180
LPPSSPHAVP AVGELSSAEE SSDESQLVVG SPVSVLRAMP GETTPLTTLK PTDAADSTAK  240
KDAAPGGGAG LSPFSADALL PDQLGGEDVF SFTPFGGDPD FGGVPFDDSP TPPLIDYLAD  300
DPTLDLGSLP MWPGVDGCRF SDIGDDDLFS LPPL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-23106169772Ethylene-responsive transcription factor ERF096
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G047500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304990.10.0ethylene-responsive transcription factor CRF1
TrEMBLC5Z4H50.0C5Z4H5_SORBI; Uncharacterized protein
STRINGGRMZM2G429378_P011e-119(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP131332332
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G03800.12e-26ERF domain protein 10