PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G041700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family DBB
Protein Properties Length: 376aa    MW: 40200.7 Da    PI: 4.7907
Description DBB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G041700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box21.64.4e-07447542
              zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg......Htvvpl 42
                           C+ ++  e++  C  ++  lC  C +e H        H++vpl
  Sobic.010G041700.1.p  4 QCNACGAAEARVLCCADEAALCVACDEEVHAAnklagkHQRVPL 47
                          7******99*********************66899999999986 PP
2zf-B_box29.31.8e-096395335
              zf-B_box  3 erkCpeHeekelqlfCedCqqllCedClleeHk 35
                           +kC+ ++e    +fC +++ llC+dC +++H 
  Sobic.010G041700.1.p 63 VPKCDICQEASGYFFCLEDRALLCRDCDVAIHT 95
                          589****************************93 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5011910.708147IPR000315B-box-type zinc finger
CDDcd000212.94E-9347No hitNo description
PfamPF006432.0E-5447IPR000315B-box-type zinc finger
SMARTSM003368.4E-10447IPR000315B-box-type zinc finger
SMARTSM003366.2E-1661108IPR000315B-box-type zinc finger
CDDcd000212.23E-964108No hitNo description
PfamPF006433.7E-76495IPR000315B-box-type zinc finger
PROSITE profilePS501198.74566108IPR000315B-box-type zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009641Biological Processshade avoidance
GO:0009658Biological Processchloroplast organization
GO:0009718Biological Processanthocyanin-containing compound biosynthetic process
GO:0010099Biological Processregulation of photomorphogenesis
GO:0015995Biological Processchlorophyll biosynthetic process
GO:0016607Cellular Componentnuclear speck
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MKIQCNACGA AEARVLCCAD EAALCVACDE EVHAANKLAG KHQRVPLLTD ADAAGTAAAA  60
PAVPKCDICQ EASGYFFCLE DRALLCRDCD VAIHTVNSFV SVHQRFLLTG VQVGLDPADP  120
VPPIAEKHVN AAGGSVNQPV KHLPRRSPTV QFSVEGSASV PSKNVTNGDY SRQNSVPTAR  180
AEVVDWTMNN STIRSVESPP KYMSEESPTL LQSSQTTTAF NQINGNSDGP YHLSFSGGNV  240
TDSLPDWPVE EFFSNSEYGP NFGFSEHGSS KGDNAKLGNA GGSPQCRLAE GSVAEELLGQ  300
VPGLITDEYM SRVPENSWTV PEVPSPPTAS GLNWHGNLCF PAYDSTMFVP EITSLQTSQN  360
QFAVPSSFKR RRREY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.25310.0leaf| root| shoot
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G041700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0352330.0BT035233.1 Zea mays full-length cDNA clone ZM_BFb0047A02 mRNA, complete cds.
GenBankKJ7285310.0KJ728531.1 Zea mays clone pUT6836 orphans transcription factor (Orphan243) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304939.10.0B-box zinc finger protein 22-like
TrEMBLA0A194YH990.0A0A194YH99_SORBI; Uncharacterized protein
STRINGSb10g003680.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP17943382
Representative plantOGRP18041634
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78600.11e-54light-regulated zinc finger protein 1