PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G037701.1.p | ||||||||
Common Name | Sb10g003350, SORBIDRAFT_10g003350 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | LBD | ||||||||
Protein Properties | Length: 147aa MW: 16220.7 Da PI: 8.5069 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 60.5 | 4.6e-19 | 1 | 64 | 36 | 99 |
DUF260 36 lFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallke 99 +FG++n++++l+++p+ +r+ ++++vye++ ra dPv+G++gvi++l++ql+ +++el++l++ Sobic.010G037701.1.p 1 MFGVKNLQRMLQKVPPPRRDVCVQTIVYESNLRAADPVRGCCGVIQDLENQLMDTAVELEVLRR 64 7**********************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 13.253 | 1 | 66 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.9E-17 | 1 | 63 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 147 aa Download sequence Send to blast |
MFGVKNLQRM LQKVPPPRRD VCVQTIVYES NLRAADPVRG CCGVIQDLEN QLMDTAVELE 60 VLRRRLESYR RMARGSHSQS QPPNPLAIQQ QLMARTSHDT QTQGPSGVGV PPAANELTAT 120 LPQLPAMEME PQLSQVPQPR LSTMPP* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G037701.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002436474.1 | 1e-101 | LOB domain-containing protein 22 | ||||
TrEMBL | A0A1W0VRC0 | 1e-101 | A0A1W0VRC0_SORBI; Uncharacterized protein | ||||
STRING | Sb10g003350.1 | 1e-101 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP19681 | 7 | 8 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G13850.1 | 5e-17 | LOB domain-containing protein 22 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G037701.1.p |
Entrez Gene | 8071309 |