PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G035300.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 626aa    MW: 65395.4 Da    PI: 7.2676
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G035300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY94.76.3e-30264323159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           ++Dg++WrKYGqK  kg+++pr+YYrCt   gCpv+k+v+r+a+d +++++tYeg+Hnh+
  Sobic.010G035300.2.p 264 MNDGCQWRKYGQKIAKGNPCPRAYYRCTVGaGCPVRKQVQRCADDMSILITTYEGTHNHP 323
                           58***************************88****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.806.8E-32249323IPR003657WRKY domain
SuperFamilySSF1182902.35E-27257324IPR003657WRKY domain
PROSITE profilePS5081128.197259325IPR003657WRKY domain
SMARTSM007741.4E-36264324IPR003657WRKY domain
PfamPF031067.0E-27265323IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006952Biological Processdefense response
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MIGTRIRETY SAANSDVEIN QIKDDDHILD GNLFKSLHES SSRKEASSSS LRERSETDEA  60
SNQTSANHNK VDKDKLASTR AEMGEVREEN KRLKTMLSRI VEDYRSLQLH FHDVLQKGQA  120
KKLADPSTIM PTGIEEPEFV SLSLGTTTSM HRKEDKNSAA EGKGREDFMS IKEEGLSLGL  180
SACKDGATNN NVKIQPEVMT LSPEVSSEDA KDDAMEAADQ QWPPSKAEKS LRNVGTGPED  240
DIGPLPQAKK ARVSVRARCD APTMNDGCQW RKYGQKIAKG NPCPRAYYRC TVGAGCPVRK  300
QVQRCADDMS ILITTYEGTH NHPLSASATA MATTTSAAAS MLTSGSSTSL RFPAASPAAA  360
GLSFGFPPAA AHDPSKHFFL PNGGAASITS TPSYPTITLD LTSPAATSQA FSLGNRFSSS  420
LVHGGARYHH PTSLSFSNSG PSALSGAAWP AAGGAGYLSY GSPAASLFNG GAALSSINGR  480
QQGGEFPVLY QPQQKASAAA SGSAPEGVLT DTIAKVITSD PSFQTVLAAA ITSYVGTQGG  540
NRSSAGGEGG SQLQGLKWGQ HLGLGPSPSS PGAACSSALL ARSSSTTAAA VVEQGSNGHR  600
SFLQPSLGLS GSHSTSTSPV ENREH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wj2_A2e-202643261778Probable WRKY transcription factor 4
2lex_A2e-202643261778Probable WRKY transcription factor 4
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G035300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436468.20.0probable WRKY transcription factor 61
TrEMBLA0A1W0VRB10.0A0A1W0VRB1_SORBI; Uncharacterized protein
STRINGPavir.Db02233.1.p0.0(Panicum virgatum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50473862
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15130.13e-60WRKY DNA-binding protein 72