PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G029800.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | NF-YB | ||||||||
Protein Properties | Length: 125aa MW: 13859.8 Da PI: 5.1004 | ||||||||
Description | NF-YB family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NF-YB | 40 | 9.1e-13 | 2 | 78 | 15 | 92 |
NF-YB 15 rimkkvlPanakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyre 92 rim +v P ++ ++ d+ket+ +c+ +f +t a + +r++ ti+ +l+ ++lG+ dyv+ ++ yl+ y + Sobic.010G029800.2.p 2 RIMSQVQPDDSSVTSDTKETM-DCIMQFSVTLTLAAMQEGRRDRHLTITDANLIVGSSSLGLVDYVQLMTEYLRLYHD 78 9******************98.8***************************************************9976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.20.10 | 3.1E-6 | 1 | 82 | IPR009072 | Histone-fold |
SuperFamily | SSF47113 | 5.69E-5 | 2 | 78 | IPR009072 | Histone-fold |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046982 | Molecular Function | protein heterodimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 125 aa Download sequence Send to blast |
MRIMSQVQPD DSSVTSDTKE TMDCIMQFSV TLTLAAMQEG RRDRHLTITD ANLIVGSSSL 60 GLVDYVQLMT EYLRLYHDDP KGSKPLEEYT IPKGTITRIL CQVLPQDPSS QGSPTVPRRP 120 WTSA* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G029800.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_008652166.1 | 5e-23 | nuclear transcription factor Y subunit B-4 | ||||
TrEMBL | A0A1W0VR95 | 8e-86 | A0A1W0VR95_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G152822_P01 | 2e-22 | (Zea mays) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G47670.2 | 2e-09 | nuclear factor Y, subunit B6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G029800.2.p |