PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G025850.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 808aa    MW: 89840.8 Da    PI: 5.0331
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G025850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.61.4e-08657699145
                           TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
       Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                           rg+W++ + +l++++++q+G++ ++ I + ++  +t+ q++ ++ 
  Sobic.010G025850.1.p 657 RGKWSKSDTDLFYEGIRQFGSD-FAMIQQLLP-DKTRHQVRQKFK 699
                           89********************.*********.********9985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF102481.4E-20164345IPR019376Myeloid leukemia factor
PfamPF159632.2E-23650730No hitNo description
SuperFamilySSF466894.79E-10651705IPR009057Homeodomain-like
PROSITE profilePS5129310.725655706IPR017884SANT domain
SMARTSM007178.7E-9656704IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.3E-5656703IPR009057Homeodomain-like
CDDcd001675.97E-6659699No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 808 aa     Download sequence    Send to blast
MARNKTGPSY LRNETLRSPE ATRAATALTR AEATAGRREA TVGQREATAA WRTATATLHP  60
SPSCFSPVLE NLRILSLQSP PNCCEMDRGQ NRRDDVFRGR DPFAGFGSHR SLISGFFGGR  120
DRFDDPFFTR PFGGQMMGEH GMFGPGPFGG QMMGEHDMFG PSPFGPMGGP FGDMGNHGFI  180
EQAPPRGNSR RPVITEVDED EGENAEHGNK QPNQDSYVQE PDDGSDGTEG GQVQLRRDLN  240
SANSGGQPQA RTFTYQSSSV TYGGINGAYY TASTTRRTGS DGITVEESKE ADTTTKEATH  300
RISRGIHDKG HSLTRKLNSD GKVDTTQTMH NLNEDELAGF EESWKGNAGH YLPGWNQNAG  360
APNSDNSGRE KGKSKSVSFY LSDASGVATP TDTNSEMGNI GNSCSDKLTD ENLSNSSQQM  420
TEKHSVTEDQ YSNDQDHEGE PLDHTVEQQP NSDVGEIASS MKLRCRKKLQ KVGTPNHTVD  480
DCFDEDCVEP SLAEEDNDSG DDYTTGNKRK ARKKSRDGVE ESQQQKVQKN KSKVSSRGRK  540
RTLKDELAAK PEKKKLTHRI RQRTPKEIKT LLESEEIDPM KLSAAHLRLL QEARERVNPK  600
EIPSGPSSNS RSFGLEDMDD LDYRDEEARF FDNDGTENHV QNTTKLNYQS YMNKPARGKW  660
SKSDTDLFYE GIRQFGSDFA MIQQLLPDKT RHQVRQKFKS EEKKNPLLVH DAIFHRSGDN  720
LYFKKVIKQL NIEDVVLPEI NNAQKQDGTS SERGPGNENV LDDFNEEENS SNWSNEEHGG  780
QMDDVQEEHD LGNGGDDDDL GDVFDWY*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.98170.0embryo| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G025850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0877290.0BT087729.1 Zea mays full-length cDNA clone ZM_BFb0176L23 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021305379.10.0uncharacterized protein LOC8069083 isoform X4
TrEMBLA0A1W0VR550.0A0A1W0VR55_SORBI; Uncharacterized protein
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP25952946
Representative plantOGRP1010535
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39160.11e-31MYB_related family protein