PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G022400.1.p
Common Name131L1.6, Sb10g002120, SORBIDRAFT_10g002120
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 429aa    MW: 45308.5 Da    PI: 7.0599
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G022400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM170.36.3e-53111411129
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk..kvka.eekewyfFskrdkkyatgkrknratksgyWkat 86 
                           +ppGfrFhPt+eel+++yLkkkv++++++l +vi++vd++k+ePwd+++  ++ +  +++wyfFs++dkky+tg+r+nrat++g+Wkat
  Sobic.010G022400.1.p  11 VPPGFRFHPTEEELLTYYLKKKVASERIDL-DVIRDVDLNKLEPWDIQEkcRIGSgPQNDWYFFSHKDKKYPTGTRTNRATAAGFWKAT 98 
                           69****************************.9***************952444443456****************************** PP

                   NAM  87 gkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrle 129
                           g+dk++++++ + +g++ktLvfykgrap+g+k+dW+mheyrle
  Sobic.010G022400.1.p  99 GRDKAIYASGARRIGMRKTLVFYKGRAPHGQKSDWIMHEYRLE 141
                           *****************************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-547150IPR003441NAC domain
PROSITE profilePS5100554.45311206IPR003441NAC domain
PfamPF023655.5E-2812140IPR003441NAC domain
SuperFamilySSF1019411.96E-54194206IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 429 aa     Download sequence    Send to blast
MSISVNGQSV VPPGFRFHPT EEELLTYYLK KKVASERIDL DVIRDVDLNK LEPWDIQEKC  60
RIGSGPQNDW YFFSHKDKKY PTGTRTNRAT AAGFWKATGR DKAIYASGAR RIGMRKTLVF  120
YKGRAPHGQK SDWIMHEYRL EPALDVDAAA GSASAHHAAA GAAADHHPYY TSSSPPALPT  180
AIRGAAGDQQ AAQEQEGWVI CRVFKKKNLV HHGQSSGGGV TAAGSKMASA AAPMEGSPSH  240
CSSVTVISDH TMNKHQAQAM LQHSASDDDA LDHILQYMGG GGGKQPDTKP VLLDHHHHHH  300
LAAAATTTTT ACSAGGAGLY GKFMKLPPLE HAGGGGGLLP SPAGACDYGA ADASGIADWD  360
ALDRLAAYEL NGLSDASKNM SAFFDEPSAT AAFSSSSSSV HAAAVDGDLW SLARSVSALH  420
ADLTMNNV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A3e-441114015140Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.203931e-141root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G022400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4884120.0AF488412.1 Sorghum bicolor BAC 131L1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436417.10.0NAC domain-containing protein 43
TrEMBLQ5NKS70.0Q5NKS7_SORBI; Putative NAM (No apical meristem) protein
STRINGSb10g002120.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP159738112
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46770.18e-81NAC family protein