PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.010G006100.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | B3 | ||||||||
Protein Properties | Length: 206aa MW: 22961.1 Da PI: 10.6628 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 85.7 | 4e-27 | 2 | 104 | 1 | 99 |
EEEE-..-HHHHTT-EE--HHH.HTT.....---..--SEEEEEETTS..-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh.....ggkkeesktltledesg..rsWevkliyrkksgryvltkGWkeFvkangLkegDfvvF 82 f+kv tpsdv+k++rlv+pk+fae+h +++ l + d +g W+++++y+ +s++yv+tkGW+++v++++L +gD+v+F Sobic.010G006100.2.p 2 FEKVVTPSDVGKLNRLVVPKQFAERHlplrgAAARSRGTVLCFHDARGggTAWRFRYSYWSSSQSYVMTKGWNRYVRDKRLAAGDTVTF 90 99***************************98444558889*****88888*************************************** PP EE-SSSEE..EEEEE-S CS B3 83 kldgrsefelvvkvfrk 99 r++++l++ +r+ Sobic.010G006100.2.p 91 C---RDGARLFIDCRRR 104 *...4667788888887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.40.330.10 | 4.1E-34 | 1 | 107 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 2.09E-28 | 1 | 103 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.52E-19 | 1 | 95 | No hit | No description |
SMART | SM01019 | 1.3E-18 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 3.0E-24 | 2 | 104 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 13.563 | 2 | 105 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 206 aa Download sequence Send to blast |
MFEKVVTPSD VGKLNRLVVP KQFAERHLPL RGAAARSRGT VLCFHDARGG GTAWRFRYSY 60 WSSSQSYVMT KGWNRYVRDK RLAAGDTVTF CRDGARLFID CRRRQRSSRT GEQAAAVPHA 120 VVVPAAILAV SPTTAGHQQQ KQGLVIFSGQ HQRQQVEEAV AVVEAAAEAE EDDEEAGRRR 180 GRWLRLFGVN LLQFRADPVL LDLQL* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5os9_A | 1e-39 | 1 | 106 | 7 | 115 | B3 domain-containing transcription factor NGA1 |
5os9_B | 1e-39 | 1 | 106 | 7 | 115 | B3 domain-containing transcription factor NGA1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.010G006100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KJ726965 | 1e-117 | KJ726965.1 Zea mays clone pUT3665 ABI3VP1 transcription factor (ABI37) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021304886.1 | 1e-149 | B3 domain-containing protein Os06g0107800-like | ||||
Swissprot | Q5VS55 | 2e-50 | Y6078_ORYSJ; B3 domain-containing protein Os06g0107800 | ||||
TrEMBL | A0A194YGL8 | 1e-148 | A0A194YGL8_SORBI; Uncharacterized protein | ||||
STRING | Sb10g000780.1 | 2e-84 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12947 | 29 | 34 | Representative plant | OGRP15589 | 2 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G61970.1 | 6e-41 | B3 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.010G006100.2.p |