PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.010G000100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 646aa    MW: 70108.4 Da    PI: 6.5097
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.010G000100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM152.42e-47301601128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatg 87 
                           lp+GfrF+Ptdeelv +yLk+k++g+ +     i++vd+  +ePw+Lp k  +++++ ew+fF++ d+ky+ g+r+nr+t++gyWkatg
  Sobic.010G000100.1.p  30 LPVGFRFRPTDEELVRHYLKPKIAGHAHADLLLIPDVDLSACEPWELPaKaLIRSGDPEWFFFAPLDRKYPGGHRSNRSTAAGYWKATG 118
                           79*************************888788**************95346777889******************************* PP

                   NAM  88 kdkevlsk.kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           kd+ + s+  g+l+g+kktLvf++grap+g++t W+mheyr 
  Sobic.010G000100.1.p 119 KDRLIRSRrAGTLIGVKKTLVFHRGRAPRGHRTAWIMHEYRT 160
                           ******9877888***************************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.96E-5327181IPR003441NAC domain
PROSITE profilePS5100554.86730181IPR003441NAC domain
PfamPF023654.2E-2631159IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 646 aa     Download sequence    Send to blast
MPSTSISSAS AAGKGGSKAM QPPPQLPAAL PVGFRFRPTD EELVRHYLKP KIAGHAHADL  60
LLIPDVDLSA CEPWELPAKA LIRSGDPEWF FFAPLDRKYP GGHRSNRSTA AGYWKATGKD  120
RLIRSRRAGT LIGVKKTLVF HRGRAPRGHR TAWIMHEYRT AEPQLQQGQN GSFVLYRLFN  180
KNEGESEASD AADSPSTSSP AIAPAVKAEN LSQPASAKMS HLLATVSSNE PTSNQGDDHL  240
LDVLSQLPDL QREHKFDGFP TITSPMRPYT DHPFLGNAGE QDLSVYIDSI IAHQDLEDLL  300
ASPCLADMVE QATVNVEPHP TSLPILDNSS NSKRLAENSR GKVGSETLLL IKGTDDTGAA  360
ASCSATKILQ ADKDNINHHT GAQSNLASNA SAQVSHFYNQ YQLQSAFIPE TEPPNSGALC  420
SAASLTPYPQ HLFNGMVAPA RIDISDSDVF NGLQGWAAEP SKDPHQGNAP RRIRLVHSIQ  480
RASVIEPVLT SHLEGEDEAG LCYSTDSSST NNNEDYANVF SQSMAGEAMH IQGGGVIPTQ  540
VVSSTEITEK LQDFTLDEGT LLHGELHHGG NLKQRHKQEH TEETSQDVRE GMQQSVHVTG  600
VAVPSLRRQR ESARIGSVVR LLFLALVVIL VFVGLWKCSS YKLFH*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3swm_A2e-45161818168NAC domain-containing protein 19
3swm_B2e-45161818168NAC domain-containing protein 19
3swm_C2e-45161818168NAC domain-containing protein 19
3swm_D2e-45161818168NAC domain-containing protein 19
3swp_A2e-45161818168NAC domain-containing protein 19
3swp_B2e-45161818168NAC domain-containing protein 19
3swp_C2e-45161818168NAC domain-containing protein 19
3swp_D2e-45161818168NAC domain-containing protein 19
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.010G000100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9532630.0EU953263.1 Zea mays clone 1394620 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002436309.20.0NAC domain-containing protein 69 isoform X1
TrEMBLC5Z2120.0C5Z212_SORBI; Uncharacterized protein
STRINGGRMZM2G163914_P020.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134132529
Representative plantOGRP1274945
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.12e-60NAC transcription factor-like 9