PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G260600.1.p
Common NameSb09g030950, SORBIDRAFT_09g030950
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 308aa    MW: 33370.5 Da    PI: 4.5377
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G260600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.45.2e-05282304223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+k+F++ + L+ H +  H
  Sobic.009G260600.1.p 282 PCKSCSKTFNSEMALQAHSKAkH 304
                           6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.18281307IPR007087Zinc finger, C2H2
PROSITE patternPS000280283304IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 308 aa     Download sequence    Send to blast
MEFWGLEVKP GSTVKCEPGH GFILHLSQAA LGESKKSDSV LMYVKVDDEK LAIGTLSIDK  60
NPQIQCDLVF DKEFELSHTS KTTSVFLTGY KVEQPTEEDE MDLDSEDEEE EELNVPVIKE  120
NGKAEGKEKQ KSQEKAVSAA SKSSLASRLV GKKSKDEDDS DEDETDDSDV DETDDSDEGE  180
GLSPEEGDDD DSSDEDDTSE GEEETPTPKK PEAGKKRAAE NALKTLLSDK KVKVATPSAQ  240
KTGGKKGATH VATPYPAKRA GKTPANNDKS KERSPRSGRS VPCKSCSKTF NSEMALQAHS  300
KAKHRAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.214660.0pollen
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G260600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441648.10.0histone deacetylase HDT2
SwissprotQ9M4U51e-140HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLC5YX400.0C5YX40_SORBI; Uncharacterized protein
STRINGSb09g030950.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.22e-29histone deacetylase 3