PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G258300.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family LBD
Protein Properties Length: 412aa    MW: 43235.4 Da    PI: 7.2974
Description LBD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G258300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF26090.81.7e-2847151199
                DUF260   1 aCaaCkvlrrkCakdCvlapyf.....paeqpkkfanvhklFGasnvlkllkalpeee.redamsslvyeAearardPvyGavgvilkl 83 
                           +C++C+vlr++C++ C+++p++      ++q++++ +++k++G++ +l+l++a+p++  r+++++sl+yeA+ r+ +PvyGavg+++++
  Sobic.009G258300.1.p  47 SCNGCRVLRKGCSDACTIRPCLqwiksSDAQANATVFLAKFYGRAGLLNLIAAAPNDAlRPAVFRSLLYEACGRIVNPVYGAVGLLWSG 135
                           6*********************9998666889**********************99888****************************** PP

                DUF260  84 qqqleqlkaelallke 99 
                           +++++q+++e++l ++
  Sobic.009G258300.1.p 136 TWHMCQAAVEAVLKGA 151
                           **********998766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5089116.26646153IPR004883Lateral organ boundaries, LOB
PfamPF031958.7E-2347146IPR004883Lateral organ boundaries, LOB
Sequence ? help Back to Top
Protein Sequence    Length: 412 aa     Download sequence    Send to blast
MSVRPSGPFH CSHHTTPHHT TSSITCFVAI ISTTTYHHKA GQIMRLSCNG CRVLRKGCSD  60
ACTIRPCLQW IKSSDAQANA TVFLAKFYGR AGLLNLIAAA PNDALRPAVF RSLLYEACGR  120
IVNPVYGAVG LLWSGTWHMC QAAVEAVLKG APIVQVSADD AAADAAAGPS IMNPPPPPAA  180
AAAAAAAYDI RHVFPKSSSN KHSAGGGAPP PPAAVDAAAQ SKDDKHTHRQ RLLHKVLVSK  240
RTSSSSPPSK TKKSKTTTTT TTQNNKPHRA AASLATEHHN DDDDMLMMLV ADHSCDEEQQ  300
HAAVRLASNT NFNSKSRRAS SDDDCDDRHS ASASLDTEEA ASHVSQAAAE EAEPQQDDQL  360
AEAEQQPPPM GLDLTLGLLT SSAPPPIGCR QGGGSSAAVD EPAGVIGFRF L*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G258300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9547642e-94EU954764.1 Zea mays clone 1482325 hypothetical protein mRNA, complete cds.
GenBankKJ7284042e-94KJ728404.1 Zea mays clone pUT6709 LOB transcription factor (LOB15) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304107.10.0uncharacterized protein LOC8066567
TrEMBLA0A1B6PAI10.0A0A1B6PAI1_SORBI; Uncharacterized protein
STRINGSb09g030780.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP123537127
Representative plantOGRP4031699
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G67100.19e-63LOB domain-containing protein 40