PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G244600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 103aa    MW: 11372.5 Da    PI: 9.5003
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G244600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding28.63.2e-091360347
                          SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS
       Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47
                          +WT+   +++ +a + +  +   +W+ Iar+mg ++++ +++ ++ ++
  Sobic.009G244600.1.p 13 AWTQRQNKQFECALAVYDREtpdRWHNIARYMGGTKSADEVRRHFEQL 60
                          7*****************88************************9775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.121661IPR017877Myb-like domain
SMARTSM007171.1E-81063IPR001005SANT/Myb domain
SuperFamilySSF466892.69E-111268IPR009057Homeodomain-like
CDDcd001672.82E-61361No hitNo description
PfamPF002495.7E-71360IPR001005SANT/Myb domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 103 aa     Download sequence    Send to blast
MASGGSSSSS SRAWTQRQNK QFECALAVYD RETPDRWHNI ARYMGGTKSA DEVRRHFEQL  60
VHDVTQIEAG RVPFPRYGYG SAPPAGGGGL DDTSRAKYMK FQ*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A1e-235102293RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G244600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF1849211e-125KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441575.23e-72protein RADIALIS-like 3 isoform X1
TrEMBLA0A1B6PAA67e-71A0A1B6PAA6_SORBI; Uncharacterized protein
STRINGSb09g029575.15e-51(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27038230
Representative plantOGRP3471298
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75250.27e-26RAD-like 6