PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G244300.2.p | ||||||||
Common Name | Sb09g029560, SORBIDRAFT_09g029560 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 89aa MW: 9723.87 Da PI: 7.5075 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 28.2 | 4.5e-09 | 14 | 59 | 2 | 44 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrw 44 WT+ +l+ +a + + ++ +W+ Iar +g g+++++++ ++ Sobic.009G244300.2.p 14 AQWTPKQNKLFEQALAVYDKDtpdRWHNIARAVGGGKSAEDVRRYY 59 57*****************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.133 | 8 | 63 | IPR017877 | Myb-like domain |
SMART | SM00717 | 2.6E-7 | 12 | 65 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 6.7E-7 | 14 | 59 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.4E-4 | 15 | 64 | IPR009057 | Homeodomain-like |
SuperFamily | SSF46689 | 1.05E-11 | 15 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 3.71E-7 | 16 | 59 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 89 aa Download sequence Send to blast |
MASMQSMTSA AARAQWTPKQ NKLFEQALAV YDKDTPDRWH NIARAVGGGK SAEDVRRYYD 60 LLEEDVGHIE SGKVPFPAYR CATGYGAA* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 4e-27 | 16 | 84 | 11 | 78 | RADIALIS |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.11213 | 1e-150 | shoot |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in the micropylar endosperm surrounding globular-stage embryos but no expression was detected elsewhere, including floral tissues. {ECO:0000269|PubMed:17672842}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G244300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF184921 | 1e-114 | KF184921.1 Saccharum hybrid cultivar R570 clone BAC 078K12 complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441574.1 | 4e-61 | protein RADIALIS-like 3 | ||||
Swissprot | Q1A173 | 6e-29 | RADL6_ARATH; Protein RADIALIS-like 6 | ||||
TrEMBL | C5YWE6 | 8e-60 | C5YWE6_SORBI; Uncharacterized protein | ||||
STRING | Sb09g029560.1 | 1e-60 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP270 | 38 | 230 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G75250.2 | 2e-30 | RAD-like 6 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G244300.2.p |
Entrez Gene | 8064723 |