PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G238500.1.p
Common NameSb09g029070, SORBIDRAFT_09g029070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 303aa    MW: 32355.2 Da    PI: 9.3932
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G238500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP260.34.6e-19120170256
                   AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr++  +g+WvAeIr p +   r r++lg+++++e Aa a+++a+ +l+ge
  Sobic.009G238500.1.p 120 LYRGVRQRQ-WGKWVAEIRLPQN---RVRVWLGTYDSPETAAHAYDRAAYRLRGE 170
                           59****999.**********954...5**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000183.46E-28119177No hitNo description
Gene3DG3DSA:3.30.730.103.6E-30120177IPR001471AP2/ERF domain
PROSITE profilePS5103223.064120177IPR001471AP2/ERF domain
SMARTSM003807.2E-32120183IPR001471AP2/ERF domain
SuperFamilySSF541715.49E-22120177IPR016177DNA-binding domain
PRINTSPR003674.3E-12121132IPR001471AP2/ERF domain
PfamPF008474.0E-13121170IPR001471AP2/ERF domain
PRINTSPR003674.3E-12159179IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 303 aa     Download sequence    Send to blast
MDASLRTLPP AGSSFPGEVR SAVSSLLLSS PGGTSALDTV FSHLPPPVTI PPLGSSVYYR  60
QCELLRHFAA SQTHQPATAT AAACSSSSSS SSAASASFQF QPQAPPDDAA AAAAMLRQKL  120
YRGVRQRQWG KWVAEIRLPQ NRVRVWLGTY DSPETAAHAY DRAAYRLRGE YARLNFPGVM  180
DAPDTDCPDH LRQLRAAVDA KIQAIRARMA RKRARARKQR EEKESARSGS GANSSKPAAA  240
RPVASEGAAT TTTTTTTSET STTPYGSPDG VLSVSAVSAE GDCPLERMPS FDPELIWEML  300
NF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-18117177263ATERF1
3gcc_A2e-18117177263ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1209215ARKRARA
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.170190.0callus| root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G238500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0389880.0BT038988.1 Zea mays full-length cDNA clone ZM_BFb0347O12 mRNA, complete cds.
GenBankKJ7275020.0KJ727502.1 Zea mays clone pUT5361 AP2-EREBP transcription factor (EREB34) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441543.10.0ethylene-responsive transcription factor ERF061
TrEMBLC5YW010.0C5YW01_SORBI; Uncharacterized protein
STRINGSb09g029070.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP88282842
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G39780.11e-30ERF family protein