PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G238200.1.p | ||||||||
Common Name | Sb09g029050, SORBIDRAFT_09g029050 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 273aa MW: 29083.5 Da PI: 6.1549 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 79.7 | 3.2e-25 | 110 | 171 | 1 | 59 |
---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 ldDg +WrKYGqK++ g+++pr+Y+rCt++ gC ++k+v+r++ dp + +++Y+g H++ Sobic.009G238200.1.p 110 LDDGLSWRKYGQKDILGAKYPRAYFRCTYRhsqGCLATKHVQRADGDPLLHDVVYHGAHTCA 171 58**************************998899**************************96 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 2.0E-25 | 99 | 172 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.54E-24 | 105 | 171 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 21.333 | 105 | 168 | IPR003657 | WRKY domain |
SMART | SM00774 | 2.1E-37 | 110 | 172 | IPR003657 | WRKY domain |
Pfam | PF03106 | 9.3E-24 | 111 | 170 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 273 aa Download sequence Send to blast |
MDGYGSYGGE KSALASELAQ VLAMVRELEA RMDQDPLPAA ARELCAELAS SVDRSIRIAR 60 SCCVDSPASG SGSPRSDGGN AGAAQSKRRK GTPCVRRQLR AASVQDAAAL DDGLSWRKYG 120 QKDILGAKYP RAYFRCTYRH SQGCLATKHV QRADGDPLLH DVVYHGAHTC AQAAHPSAQQ 180 LRQELQLQPG HGAQEDQASP LALETEGLRA ALLEPMTPYS FATVAGAGAG ASAGADFAGW 240 CPLLSPTALD WQFEELFTNA MEPFQWDLYT AN* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 2e-19 | 110 | 170 | 8 | 68 | OsWRKY45 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G238200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KU058619 | 1e-102 | KU058619.1 UNVERIFIED: Panicum miliaceum WRKY1-like gene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440286.1 | 0.0 | probable WRKY transcription factor 53 | ||||
TrEMBL | C5YVZ9 | 0.0 | C5YVZ9_SORBI; Uncharacterized protein | ||||
STRING | Sb09g029050.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3355 | 31 | 83 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G24110.1 | 8e-33 | WRKY DNA-binding protein 30 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G238200.1.p |
Entrez Gene | 8064699 |