PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G236000.1.p | ||||||||
Common Name | Sb09g028850, SORBIDRAFT_09g028850 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 230aa MW: 24106.2 Da PI: 7.4972 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 61.2 | 1.3e-19 | 107 | 141 | 1 | 35 |
GATA 1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35 C+nC t +TplWR+gp+g+k+LCnaCG++y+k+++ Sobic.009G236000.1.p 107 CANCDTASTPLWRNGPRGPKSLCNACGIRYKKEER 141 ********************************986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57716 | 1.38E-14 | 98 | 142 | No hit | No description |
SMART | SM00401 | 2.6E-18 | 101 | 153 | IPR000679 | Zinc finger, GATA-type |
PROSITE profile | PS50114 | 13.903 | 101 | 137 | IPR000679 | Zinc finger, GATA-type |
Gene3D | G3DSA:3.30.50.10 | 7.1E-17 | 102 | 141 | IPR013088 | Zinc finger, NHR/GATA-type |
CDD | cd00202 | 7.59E-13 | 106 | 138 | No hit | No description |
PROSITE pattern | PS00344 | 0 | 107 | 132 | IPR000679 | Zinc finger, GATA-type |
Pfam | PF00320 | 2.4E-17 | 107 | 141 | IPR000679 | Zinc finger, GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0030154 | Biological Process | cell differentiation | ||||
GO:0045944 | Biological Process | positive regulation of transcription from RNA polymerase II promoter | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005667 | Cellular Component | transcription factor complex | ||||
GO:0000977 | Molecular Function | RNA polymerase II regulatory region sequence-specific DNA binding | ||||
GO:0001085 | Molecular Function | RNA polymerase II transcription factor binding | ||||
GO:0001228 | Molecular Function | transcriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding | ||||
GO:0003682 | Molecular Function | chromatin binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 230 aa Download sequence Send to blast |
MLQQEVPPCA CGPRYAGGCG GRCAASAPAF SLLFPMPMAL PPEQCYYYHA EDGGPVDCTL 60 SLATPSTRRA EAAGVVHARA GGGGGGAAVL VEEPLQQQQE GSPPRRCANC DTASTPLWRN 120 GPRGPKSLCN ACGIRYKKEE RRAAAAVAPA PATQDSGGWL YACGGYARPP QQQQQQQWGC 180 YGKSVASYGM YGGDGVVDAD GPCLSWMLNV VPSSPAFAVP ERHTLFQYY* |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00110 | ampDAP | Transfer from AT2G18380 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G236000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002441533.1 | 1e-165 | GATA transcription factor 15 | ||||
Swissprot | Q9ZPX0 | 2e-26 | GAT20_ARATH; GATA transcription factor 20 | ||||
TrEMBL | C5YVX7 | 1e-164 | C5YVX7_SORBI; Uncharacterized protein | ||||
STRING | Sb09g028850.1 | 1e-165 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1665 | 37 | 102 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G36620.1 | 1e-24 | GATA transcription factor 19 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G236000.1.p |
Entrez Gene | 8063620 |
Publications ? help Back to Top | |||
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