PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G235500.1.p | ||||||||
Common Name | Sb09g028790, SORBIDRAFT_09g028790 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 88aa MW: 9934.05 Da PI: 7.5034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 25.5 | 3.1e-08 | 13 | 59 | 2 | 45 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45 +W++ E + + +a + +G g +W+++++ mg +++++++ ++ Sobic.009G235500.1.p 13 SKWSPKENKMFEQALAYYGEGtpnRWDKVSSAMGGIKSAEEVRCHYE 59 58********************************668******9996 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 6.423 | 7 | 62 | IPR017877 | Myb-like domain |
SMART | SM00717 | 8.9E-4 | 11 | 64 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 6.13E-11 | 12 | 61 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 5.1E-7 | 14 | 60 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.35E-5 | 14 | 58 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 88 aa Download sequence Send to blast |
MSASRSSSPN SMSKWSPKEN KMFEQALAYY GEGTPNRWDK VSSAMGGIKS AEEVRCHYED 60 LDYDVKMIES GHVPYPQYKT QGFWTRG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 2e-20 | 6 | 82 | 2 | 77 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G235500.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU955181 | 1e-119 | EU955181.1 Zea mays clone 1515957 SANT/MYB protein mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021303052.1 | 2e-60 | protein RADIALIS-like 3 | ||||
Swissprot | F4JVB8 | 4e-23 | RADL1_ARATH; Protein RADIALIS-like 1 | ||||
TrEMBL | A0A1B6P9W3 | 4e-59 | A0A1B6P9W3_SORBI; Uncharacterized protein | ||||
STRING | Sb09g028790.1 | 6e-60 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1067 | 33 | 121 | Representative plant | OGRP347 | 12 | 98 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G39250.1 | 2e-23 | RAD-like 1 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G235500.1.p |
Entrez Gene | 8063615 |
Publications ? help Back to Top | |||
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