PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G234900.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 632aa MW: 65848.4 Da PI: 7.0096 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 96.3 | 2e-30 | 364 | 422 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 +Dg++WrKYGqK+ kg+++pr+YYrCt+a gCpv+k+v+r+aed +vv++tYeg+Hnh+ Sobic.009G234900.1.p 364 NDGCQWRKYGQKMAKGNPCPRAYYRCTMAaGCPVRKQVQRCAEDRTVVITTYEGHHNHP 422 8***************************99****************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.6E-33 | 348 | 424 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 6.02E-28 | 356 | 424 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 30.136 | 358 | 424 | IPR003657 | WRKY domain |
SMART | SM00774 | 7.5E-37 | 363 | 423 | IPR003657 | WRKY domain |
Pfam | PF03106 | 2.3E-26 | 364 | 422 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 632 aa Download sequence Send to blast |
MESSYLGKRR LNGGADRETT TARAPAASSF LPAAAMGYEY GDAAEAADHH HLPRRVAAGE 60 MDFFKKERKD AAAAAALAAF VPSSSDEHGI KEDDLTINMG LHHVSGRKSS IRSEESSVDD 120 GVSSNGVDHR ETKAELALAK SELGRLNEEN KQLKDMLSRM TIKFNAFQVQ MPVYTTLMQQ 180 QQQRTNNHQA LLRGAPGHEL MNVDPETKDH QEGSGGSHLL PRQFISSLGT APDDPLRSVG 240 SDAMHGGGNS SGSSTSNAEP PPPQPLDYCP GNGLMVSSKE MMPLPAFEHG HQQPQQHLAH 300 EMGSSSRADE PPQPHHLAAA QQGWLSNKVH KFLPSKGPEP VPEAATMRKA RVSVRARSEA 360 PMINDGCQWR KYGQKMAKGN PCPRAYYRCT MAAGCPVRKQ VQRCAEDRTV VITTYEGHHN 420 HPLPPAAMPM ASTTAAAASM LLSGSMPSAD GGSLMAGSNF LARAVLPCSS NVATISASAP 480 FPTVTLDLTQ PPPGAASASA SAFAQPPASA PAQARATGTE PSQLQAALAD AAGRPMPLTT 540 QLFGQKLYDP SSKAPAAQAD AAGDTVSAAA VIASDPNFTA MLAAAIKSYI GSSGSGSNGA 600 GGSSGTTVLP PAGASSAGDS SRDDKVGEQG S* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2ayd_A | 1e-21 | 350 | 426 | 1 | 76 | WRKY transcription factor 1 |
Search in ModeBase |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00428 | DAP | Transfer from AT4G04450 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G234900.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC120986 | 2e-92 | AC120986.2 Oryza sativa Japonica Group cultivar Nipponbare chromosome 5 clone OJ1781_H11, complete sequence. | |||
GenBank | AP014961 | 2e-92 | AP014961.1 Oryza sativa Japonica Group DNA, chromosome 5, cultivar: Nipponbare, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440265.2 | 0.0 | WRKY transcription factor 42 | ||||
TrEMBL | A0A1B6PA50 | 0.0 | A0A1B6PA50_SORBI; Uncharacterized protein | ||||
STRING | Sb09g028750.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP12695 | 27 | 34 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G04450.1 | 1e-69 | WRKY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G234900.1.p |