PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.009G234100.1.p | ||||||||
Common Name | Sb09g028660, SORBIDRAFT_09g028660 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | WRKY | ||||||||
Protein Properties | Length: 425aa MW: 44449.3 Da PI: 6.8825 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 105.2 | 3.3e-33 | 194 | 251 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhe 59 +Dgy+WrKYGqK vk+s+fprsYYrCt+++Cpvkk+vers +d vv++tYeg+H+h+ Sobic.009G234100.1.p 194 EDGYRWRKYGQKAVKNSPFPRSYYRCTTQKCPVKKRVERSYQDAAVVITTYEGKHTHP 251 8********************************************************7 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 6.2E-35 | 178 | 253 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 3.66E-29 | 185 | 253 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 31.95 | 188 | 253 | IPR003657 | WRKY domain |
SMART | SM00774 | 3.2E-39 | 193 | 252 | IPR003657 | WRKY domain |
Pfam | PF03106 | 3.1E-26 | 194 | 251 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 425 aa Download sequence Send to blast |
MSGARHEHHL SGDFQFHDEL ASLFAHQRPD AAPMAQPWFM DYLHATAAAA SPLDCDAFVG 60 DFIDVPAVAA DEVVKRELVM VDTAAAGSGG GTPTPTTAPL TPNSMSMSST SSEACGAGAG 120 AGEESAAGKC KKEDGEEEGL ESKDDGSAAG KGDGGEGEEK NKKGAANKGK GKGEKRPRQP 180 RFAFMTKSEV DHLEDGYRWR KYGQKAVKNS PFPRSYYRCT TQKCPVKKRV ERSYQDAAVV 240 ITTYEGKHTH PIPATLRGSS HLLAAAHHHP MGGLHHVHPH FRMAPPPPPA ALGGFRPGGG 300 ANAFDALGLG LLQPPSSSQQ QQQGHHHHHG AAAMQQLAVS GGAAGVQQVN AAAAMASHAA 360 LPDDGDQHGL AAIAGAAGTT TAATTAASAP LRMQHFMAQD YAGLLQDMFP SFVHSDDDGH 420 HHHH* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1wj2_A | 2e-26 | 184 | 254 | 8 | 78 | Probable WRKY transcription factor 4 |
2lex_A | 2e-26 | 184 | 254 | 8 | 78 | Probable WRKY transcription factor 4 |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.009G234100.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | FP101665 | 1e-132 | FP101665.1 Phyllostachys edulis cDNA clone: bphyem202m15, full insert sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002440260.1 | 0.0 | probable WRKY transcription factor 34 | ||||
TrEMBL | C5YVV8 | 0.0 | C5YVV8_SORBI; Uncharacterized protein | ||||
STRING | Sb09g028660.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP623 | 37 | 173 | Representative plant | OGRP14 | 17 | 875 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G29860.1 | 6e-46 | WRKY DNA-binding protein 71 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.009G234100.1.p |
Entrez Gene | 8074604 |