PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G233100.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 287aa    MW: 30261.7 Da    PI: 8.0767
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G233100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP259.29.8e-19127178256
                   AP2   2 gykGVrwdkkrgrWvAeIrd.psengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                            y+GVr+++ +g+++AeIrd  +   k +r++lg+f ta+eAa a+++a+++++g+
  Sobic.009G233100.1.p 127 SYRGVRRRP-WGKFAAEIRDtRR---KGARVWLGTFATADEAALAYDKAALRMRGP 178
                           69*******.**********332...34**************************95 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.30.730.107.3E-31127185IPR001471AP2/ERF domain
PROSITE profilePS5103223.196127185IPR001471AP2/ERF domain
SuperFamilySSF541713.01E-22127187IPR016177DNA-binding domain
SMARTSM003801.2E-35127191IPR001471AP2/ERF domain
PfamPF008471.8E-14127177IPR001471AP2/ERF domain
PRINTSPR003672.9E-10128139IPR001471AP2/ERF domain
CDDcd000188.00E-27128185No hitNo description
PRINTSPR003672.9E-10151167IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 287 aa     Download sequence    Send to blast
MAIGAPPDDS RQRPAADQAA NILENVWATI IAGSATPASS STAASSEVGE ERPPEAILER  60
LPSLGRWISM GAEEWDELLL SGTAALASGA AASGELLAAS PANQEADRQH GNRATSSSKA  120
AAAACKSYRG VRRRPWGKFA AEIRDTRRKG ARVWLGTFAT ADEAALAYDK AALRMRGPRA  180
HLNFPLDVVQ REMQAAAAGD GCAGTTRVLR RKRRRSNHDA ATADGTRSHG SVAAGTGRDP  240
TMVSFACAKK DQGTPPSIVQ ERSISDPGAV IEFEDIGGEY WDYLFT*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A4e-27123188166ATERF1
3gcc_A4e-27123188166ATERF1
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1210214RKRRR
2210215RKRRRS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00441DAPTransfer from AT4G18450Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G233100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKU6854120.0KU685412.1 Saccharum spontaneum clone SES23E05, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304105.10.0ethylene-responsive transcription factor 15
TrEMBLA0A1B6PA260.0A0A1B6PA26_SORBI; Uncharacterized protein
STRINGGRMZM2G021790_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP116162736
Representative plantOGRP6161718
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G18450.12e-19ERF family protein