PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G230700.1.p
Common NameSb09g028350, SORBIDRAFT_09g028350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family Trihelix
Protein Properties Length: 348aa    MW: 37155.9 Da    PI: 10.535
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G230700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix431.2e-1342128186
              trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkm.......rergferspkqCkekwenlnkrykkikegekkrtsessstcpyf 82 
                           +W++ e+ aL++a  ++  +l+rg+l++++W+ev++++       ++r   r+ +qCk++ + l+k+yk++ +++        s +++f
  Sobic.009G230700.1.p  42 CWSDGETAALVAAWGSRYVELNRGNLRQKQWQEVADAVnnrrgasARRRPPRTDVQCKNRVDTLKKKYKAELARNAP------SGWSFF 124
                           7******************************************9999999*********************999996......469999 PP

              trihelix  83 dqle 86 
                            +l+
  Sobic.009G230700.1.p 125 PELD 128
                           9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138371.1E-2540130No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MEVREMAMAA AAAAASVGGG GGGGGGVKLP PPNPNLPYRE DCWSDGETAA LVAAWGSRYV  60
ELNRGNLRQK QWQEVADAVN NRRGASARRR PPRTDVQCKN RVDTLKKKYK AELARNAPSG  120
WSFFPELDRL VGPTLSASAS KRPLASLPPQ FALPLHPPAV RRPPSPSPSS SSPPPPMALP  180
LPNYRRGSPL PAAALIQKEA AAAAAAVSDS EDSDDADGNN NHNSPRSPSR SLSSLSGSNK  240
KRSRDEASSS AEKGFRELAR AIEAFAEMYE RVESAKQKHA VEMERQRIEF LKQLEVKRME  300
NFVDAHVKLA RAKRTKKTTG GAADGAGAME LVATVAALPF VSTSTFL*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.101310.0leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G230700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0398060.0BT039806.1 Zea mays full-length cDNA clone ZM_BFc0045P15 mRNA, complete cds.
GenBankBT0433870.0BT043387.2 Zea mays full-length cDNA clone ZM_BFc0175K05 mRNA, complete cds.
GenBankEU9671220.0EU967122.1 Zea mays clone 299578 6b-interacting protein 1 mRNA, complete cds.
GenBankHQ8586720.0HQ858672.1 Zea mays clone UT1108 Trihelix transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002440242.10.0trihelix transcription factor ASIL2
TrEMBLC5YVI30.0C5YVI3_SORBI; Uncharacterized protein
STRINGSb09g028350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP20653279
Representative plantOGRP4871684
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58630.17e-30sequence-specific DNA binding transcription factors