PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.009G211700.1.p
Common NameSb09g026730, SORBIDRAFT_09g026730
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 300aa    MW: 32304.2 Da    PI: 4.3894
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.009G211700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H215.74.3e-05274296223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +C+ C+k+F++ + L+ H +  H
  Sobic.009G211700.1.p 274 PCKSCTKTFNSEMALQAHSKAkH 296
                           6*****************88777 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.743273299IPR007087Zinc finger, C2H2
PROSITE patternPS000280275296IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009294Biological ProcessDNA mediated transformation
GO:0009944Biological Processpolarity specification of adaxial/abaxial axis
GO:0010162Biological Processseed dormancy process
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005618Cellular Componentcell wall
GO:0005730Cellular Componentnucleolus
GO:0005739Cellular Componentmitochondrion
GO:0005774Cellular Componentvacuolar membrane
GO:0005829Cellular Componentcytosol
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 300 aa     Download sequence    Send to blast
MEFWGLEVKP GSTVKCEPGH GFILHLSQAA LGESKKSDNA LMYVKVDDQK LAIGTLSIDK  60
FPQVQFDLVF DKEFELSHTS KTTSVFFSGY KVEQPMEEDE MDLDSEDEEE LDVPVIKENG  120
KADGKEQKSQ EKAVAAASKS SLVSKKSKDD DDSDEDETDD SDSDDTDDSD EGEGLSPEEG  180
DDDDSSDEDD TSDDEEEETP TPKKKPEAGK KRPAENSLTP LSDKKAKVAT PSAQKTGGKK  240
GAVHVATPHP AKGKTPANND KSKEKSPKSG GSVPCKSCTK TFNSEMALQA HSKAKHGAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.121270.0embryo| leaf| pollen
Functional Description ? help Back to Top
Source Description
UniProtMediates the deacetylation of lysine residues on the N-terminal part of the core histones (H2A, H2B, H3 and H4). Histone deacetylation gives a tag for epigenetic repression and plays an important role in transcriptional regulation, cell cycle progression and developmental events (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.009G211700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364960.0BT036496.1 Zea mays full-length cDNA clone ZM_BFb0119A06 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002441441.10.0histone deacetylase HDT2
SwissprotQ9M4U51e-142HDT2_MAIZE; Histone deacetylase HDT2
TrEMBLC5YUI20.0C5YUI2_SORBI; Uncharacterized protein
STRINGSb09g026730.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP22043065
Representative plantOGRP10531129
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G44750.23e-28histone deacetylase 3